Coregonus clupeaformis (lake whitefish): 121532018
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Entry
121532018 CDS
T08357
Symbol
cspg4
Name
(RefSeq) chondroitin sulfate proteoglycan 4
KO
K08115
chondroitin sulfate proteoglycan 4
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
cclu00535
]
121532018 (cspg4)
04091 Lectins [BR:
cclu04091
]
121532018 (cspg4)
Proteoglycans [BR:
cclu00535
]
Cell surface proteoglycans
Others
121532018 (cspg4)
Lectins [BR:
cclu04091
]
C-Type lectins
Others
121532018 (cspg4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Laminin_G_2
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
121532018
NCBI-ProteinID:
XP_041693591
LinkDB
All DBs
Position
19:30107801..30216019
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AA seq
2334 aa
AA seq
DB search
MRALRLVLLSAFLPLLCLPSPSHGASYFGDSFCKITSIQDVSSFHLSLQFKTSRRSGLLL
LAAGMQDYLFLELQNGKLQVRMDLGAGEMVLSSSLGLQLNNIVEHKVSITMQEAKLTMLI
DDLFFTFISVPQTQEDLNIDMGVYLGGTGDLDAPYLSNTIPPFRGCMTNVKLESHQFDIL
DSEPIDCHDTKESCSSEFEAGDGEATSFISPDSFVSFPTWSGASGSERTLEFLMKTTIED
ALLTFHPGRESDFIAVGVVGGYLKGVVDLGSGMVVLDNPRVQLDDDQWHRIRVTVDATVF
EINVDSQPASLPLRGSERLDLVGNLYMGGIQGKMKDVFRDSSLSRMEEEITSESFIGCMG
EIKVNQKDRSLQDALVTKDVHVKCEGEDYDYSSYYDFEATTTTAPVRIRYVDADPNERHC
YPTDDTPEAFRNITKLLEVKPLLVPEGEEAFLDIYNLSPTFDLNTVGIRQSQIIFTLQSD
PWYGLLDMNIKTRRTKKFTLLDVVNKKIKYLHDGNEKYGDQIQLEVVTHSNSYLPECLKN
PRQYLLPVEIIPVNDTPQLSGGDISITESGRTRLNPNLIKIVDSDTRCDELIVTVTSEPP
RGVGYLENDQQPGRSIKEFTCRQLKDGNIYFVHRTGSGGITLQVSDGQSISHSTTFKLSI
TQPQMSLVTNTGLMLSQGSNSSIGIQNLAVIATPRNGDIVYNVTQALRYGELHVLTSNGL
PKQVTSFHQSDLEQERLIYVSTDSSDLEDVVSDHFQFDVHLGQFSLWNNTFLIKITPSQV
KMVQVVPLEIESEVEQKAIKHTELEAEVKGKSVAPETIRYILLKAPTLGTLQMIGRKLVE
GDSFTQQDLWNAQVSYRVRVQRAVASEDQFQFRVFAENQYSPMYTYPIKIQADSDAPVLT
NERLIVLEGGENILNKDYLWVQTSVSTNFVYRVTQDPKYGRLIRESPPGQPRFDGAIRMF
SNEDLNLDRLIYQHDGSESSDDEFSFLVFEQAAGSENIRIDGQESMSGMFRISIQSKNDH
VPLRVVDKTFNVVRNGQRLLTTEDILFRDDDSGFNDTQLVFVRTGILSGNIVSTSDPSQP
LFRFTQADVRDQNVLFVHHGADRERFQLQVSDGLHKTTALLQIQAGEAYLRVVNNTMVVM
DHGSTKTLNTSLLSAESNMDIRDASDIRFQVTSPPSDGKIIVSGIEASRFTQEDLKKGVV
SYEHNDQSLSSKDSFGFTVEAKGFSEEGTFRIKIFKQGYLSEPEVITNEVIISYEGEHTV
INQDHLKVEQPDILPSEMVFTIKEPPRLGHVVMLTNHSDSTAAPILDYIHSFTQEDVNRG
RILYVSASIQGSDGFAADVSNGFTTVEDLRMTVDIVPRLIPIQALNFSVREGGGMALTTE
LLNISHPFYSAVNVDFIVEEPPQHGDIRYLDGDEQALTFFTWEEVKLGHIYYLHDSTESS
EDSFTLSATAYEIERRSLPVTFTVTVFPVNDEPPKLTRNTGLEVLAGEESDITTSMLNTE
DADTPINELVYSIESTINGMVALKVEPDEEIQNFTQAQINNGEVVFIHEGLESGGFSFTV
TDGEHTSPLYRFVVMARQLTITMETGEELMIFPGTRHAITSAILKAVTNEDGNEISFSLV
RSPRLGRLILANDRNQFEEITRFSQSELESGAVFYEHQMPEEPFWVVRDSVELLLSSPPA
PAVHHVLPITVSYYAAGHNVSSQLWKNKGLDIVQGQRKVIDSSILDATNLLASLPEAERG
LLDVVFELRRFPAHGRVTLGGLDLPQGAPYFMQQDIAQGELEYLHDDSGASVDSFSFRAR
LNSQGRGTPPPSPDQAVVLEEVFNISIRRRDSSPPELVSLDVLLEVLQGSMTVITQKYLN
TRDEDSTPDEVRFTVSKAPTNGRLVDATKGDHISTFTQEAVNQGQVGFVSDGSLSDGFME
FTVSDGKHHTEPHTLHIGVLARTLVLAKAPEIQVLQGDDETLVTEEMLRATTGGPNEEDV
LYKITSVPKYAAVMVDRQPTSAFTQTQIREGRVSVRFIKSTSPRDSVAFVARSRAANVSS
VLNITVKPLANIAQEPLLPRGTTVLLDKKLLDATPLANKTRTSPTFSVIQQPQGARFVRA
GGRGPEGDGQPVDTFTQKELDEGRVAMEILNGTGGSQVQDVARFLLKAHGVPPAECVLSF
KTAPYNASGVYSATLLKVPAGSAWSNSNDLPGGAGSPRITPASPRWRGNMDWPHGGDAPT
TASTDKDSHRKPVVSRRNNLWSILIPILVLLLLLLLAAILAFYLVRRNKTGKHNVQTVAG
SKPKNGEVSQETFRKTDPANNIPMSQMDSKDADPELLQHCRTTNPALKKNQYWV
NT seq
7005 nt
NT seq
+upstream
nt +downstream
nt
atgagagccctgcgtttggtcctgctgagtgccttcttgcctctgctctgtctgcccagc
cccagccatggagcatcctactttggggacagtttctgcaagataacgtcgatccaagat
gtctcctcctttcacctgtcgctgcagttcaagaccagccgacgaagtggactcctcctc
ctggctgcagggatgcaggactacctatttctggaactccaaaacgggaaattacaggtg
cgaatggaccttggggccggtgagatggtgctgtcatcatctctggggctgcaactgaac
aacatcgtggagcacaaggtgtccatcacgatgcaggaggccaaactgaccatgctgatc
gatgacctcttcttcactttcatctctgtccctcaaacccaggaggacctcaacattgac
atgggggtttacctggggggcaccggagacttagacgccccatatctcagcaataccata
cctccattccgcggctgcatgaccaatgtcaagttggagtcccatcagtttgatattctc
gactccgagcccatcgactgccatgacacaaaggagtcctgtagcagtgagtttgaggct
ggcgatggagaggcgaccagcttcatcagcccagactcatttgtgtccttccctacttgg
agcggggctagtggtagtgaaaggaccttggagtttctcatgaagaccaccatcgaggat
gccctactcaccttccaccctggacgagagtcagactttatcgctgttggcgttgtgggc
ggttacctaaaaggtgtggtggaccttgggagtgggatggtggtactggacaaccccaga
gtacagctagatgatgatcagtggcataggatcagagtcactgtagatgcgactgtgttt
gagattaacgtggacagccagcctgcctctctccctctaaggggctcagagcgattggat
ctagttggcaatctgtatatgggggggatccagggcaagatgaaggatgtgtttcgtgat
agtagcttgtctcgtatggaggaggaaataacatctgagtcttttatcggatgcatggga
gaaatcaaagtgaaccagaaggacagaagcctgcaggacgctttggtcaccaaagacgtc
catgtgaagtgcgagggagaggactatgactactcaagttactatgattttgaggcaacc
acaactacggctcctgttcggatccgatatgttgacgctgaccctaatgaaagacattgc
tacccaactgacgacacaccagaggccttccggaacattacaaagcttcttgaagtcaaa
cctttgcttgtgcccgaaggtgaggaagcttttctcgatatttacaaccttagccctaca
tttgacctaaacactgtgggaatccgccaatcccagatcatcttcactctacaaagtgat
ccttggtacggactcctagatatgaacatcaaaaccagacgtaccaaaaagtttacactc
ctggatgtggtcaacaagaagatcaagtatctccatgacggcaatgaaaagtatggcgat
cagatccagttggaggtggttacccatagtaacagttaccttccagaatgtctaaaaaat
ccccgccagtacctcctcccagtggagatcatacctgtcaatgacacaccacaactaagc
ggaggagacatttccatcacagaaagcggtcgcactcgcttgaatcccaaccttatcaag
attgtggattcggacactcgctgtgacgaattgattgtcactgtgacctcagaacctccc
agaggggttggctacttagaaaatgaccagcaaccagggagaagtatcaaagagttcaca
tgcaggcagttgaaagacggcaatatatattttgtccacagaactgggagtggtgggata
actctacaggtatctgacggacaatccataagtcattcgaccacttttaaactgtccatt
acacagccccaaatgagccttgtgaccaatactggccttatgttgtctcagggaagcaac
tcttccattgggatccagaacctggctgtcattgccacccctcgtaatggagatattgtg
tataacgtcacacaggctctgagatatggtgaactgcatgttctcactagcaatggttta
cccaaacaggtgacatcttttcatcagtcagatttggagcaagaacgcttgatatatgtt
agcacagactcaagtgacctggaggacgttgtgtcagatcattttcaatttgatgtccat
cttggacagttttccctgtggaacaacacttttttgatcaagatcacaccctcccaggtt
aaaatggtccaagtagttccccttgagattgagagtgaggtagagcaaaaggcaataaaa
cacactgaacttgaggcagaagtgaagggaaagagtgtagccccagaaactataagatac
atccttctgaaggcccccacactgggtactcttcaaatgatcggcaggaagctagttgag
ggagacagtttcacccaacaggacctctggaatgcccaggtcagctatagagtccgggtg
caaagggctgtggctagcgaggaccagttccagttcagagtctttgcagagaatcagtac
tcccctatgtacacctacccaatcaagatccaggctgattcagacgcccctgttttgacc
aatgagagactcattgtcttggagggcggggagaatattctgaacaaagactatctatgg
gttcagacatccgtctcgacaaactttgtttacagggtgacgcaagacccaaagtatggc
cgtctcatcagggagtccccacctggacagcccaggttcgacggggccattagaatgttc
agcaatgaggacctgaatctagataggctgatctaccaacatgatggctcagagtctagc
gatgatgagttctctttcctggtattcgagcaagcagcaggaagtgaaaacatccgaatc
gatggtcaagaatctatgagtggcatgtttagaatatctattcagtccaagaacgaccac
gtgcctctgagagtggttgataaaaccttcaatgtggtccgaaacggacaacgtttgctg
accacagaagacatcctcttcagggacgatgactcagggttcaatgatacccagttggtc
tttgttcgcacaggcattctctcaggaaacattgtctccacctcagacccctcgcagccc
ctctttcgtttcactcaagcagacgtgagagaccagaatgttctctttgtgcaccatggg
gcagaccgcgagcgcttccagctccaggtttctgatggcctgcacaagaccacagccctg
ctgcagatccaggctggtgaggcctacctccgggtggtgaacaacaccatggttgtcatg
gaccatggaagcacaaagacgctcaacaccagtctgttgagtgccgagtccaacatggac
ataagagatgccagtgacattaggttccaagtgacatcgccccctagtgatgggaagatc
attgtgagtgggattgaggcctctcggttcacccaggaggatctgaaaaagggtgtggtg
tcctacgagcataacgaccagagtctgagctccaaggactcgtttggcttcactgtggaa
gcaaaaggattttctgaggagggcacattcaggataaagatcttcaagcaaggctatctg
tccgagcctgaggtcatcaccaatgaggtcatcatctcctatgagggagagcacaccgtg
atcaaccaggatcatcttaaggtggaacaaccagacatcctgccctctgagatggtgttc
accatcaaggagcctcctcgtctgggccacgtggtcatgcttaccaaccactcggacagt
acggctgcgcccatcctcgactacatccactccttcacccaggaggatgtcaacaggggc
cgcatcctctatgtctctgcctccattcagggcagtgacggcttcgcggccgacgtcagc
aacgggttcaccaccgtggaggacctccggatgacggtggacatcgtgcctcgcctcatc
cccatccaggccctcaacttcagtgtgagggagggcggtgggatggcccttaccacagag
ctcctgaatatctctcaccctttctacagtgcggtcaacgtagacttcatcgtagaggag
ccaccgcagcatggggatatccgctacttggatggggacgaacaagcgctcaccttcttt
acctgggaggaggtgaaacttggacacatctactacttacatgacagcacggaaagcagc
gaggacagtttcacactctctgccacggcctatgagatagagcgccgcagcctccctgtt
accttcactgtcacagtcttcccggtcaacgatgagccgcctaaattgacacgcaacacg
ggactggaggttttagctggagaggaatcggacatcaccaccagtatgttaaatacagaa
gatgcagacacccccatcaatgagttggtttattccatcgagtcaaccatcaatgggatg
gtggctctaaaggtggaacctgacgaagaaatccagaacttcacacaggcacaaattaac
aatggggaagtcgtctttatccatgaaggtctggagtctggaggcttcagttttaccgtg
acagatggggagcacacctctcctctctaccgcttcgtcgttatggctagacagctcacc
atcaccatggaaacaggggaggagctcatgatctttccaggaacaagacatgccatcacc
agtgccattctgaaggcagtgaccaatgaggatggaaatgagataagcttctcattggtc
aggtctcctcgcctgggaagactgatcttagccaacgacaggaaccagtttgaagagatc
acacgcttctctcaatcagagctggagtccggggccgtcttctacgagcaccagatgcct
gaggagcccttctgggtggtccgggactctgtggagctcctgctctcctcccctccggcc
ccagctgtgcatcacgtcctccccatcaccgtgtcctactacgcagctggccacaacgtc
tcctcacagctctggaagaacaaaggtctggacatagtgcaaggtcagaggaaggtgatt
gacagttccatcctggacgccaccaacctgctggccagcctccccgaggcggagcgaggt
ctcctggatgtggtctttgagctgcgccgcttcccggcccatgggagagtcaccctgggg
ggcctggatctgccccagggtgccccctacttcatgcagcaggacattgcgcagggtgag
ctggagtacctccacgacgactctggagcctccgtggacagcttctccttccgagcccgg
ctcaactcccagggccgcggcacacctcccccctccccagaccaggccgtggtcctggag
gaggtcttcaacatctcgatccggagaagggactctagtcctccagagctggtgagcttg
gacgttcttctggaggttctccagggctccatgacggtgatcacccagaagtatctcaac
acccgcgatgaggacagcacgcccgacgaggtgcgcttcaccgtctccaaggcgcccacc
aacgggcggctggtggacgccaccaagggtgaccacatctccacgttcacccaggaggcg
gtcaaccagggccaggtggggtttgtcagtgacggaagcctgtcagacggcttcatggag
ttcactgtgtcggacggtaagcaccacaccgagccgcacacgctccacataggagtcctg
gcccggacgctggtgctggccaaagccccggagatccaggtgctgcagggggacgacgag
accctagtgacagaggagatgttgagggccaccacgggcggccccaatgaggaagatgtc
ctctacaagatcaccagcgtgcccaagtatgccgccgtcatggtggaccggcagcccacg
tcggccttcacccagacccagatcagggagggccgggtgagcgttcgcttcatcaagtcc
acctcgccccgggacagcgtggccttcgtggcccggagccgggcggccaacgtctcctct
gtcctcaacatcacggtcaagcctctggccaacatcgcacaggaacccctgcttccacgg
ggcaccactgtgctgctggacaagaagctgctggatgccacgccgctggccaacaagacc
cggacgtcgcccaccttcagcgtcattcagcagccacaaggcgcccgcttcgtgagggct
ggcgggagagggccagagggagacggccagcccgtggacacattcacccagaaagaactg
gatgagggccgtgtggccatggagatcctgaatgggacaggaggcagccaagtccaggat
gtggctcgcttcttgctcaaggcccatggggtccctcccgctgagtgcgtcctctccttc
aagacggccccttacaacgcctcaggggtctactcggccactctccttaaagtccccgcc
gggtctgcatggtccaatagcaacgacctccctggaggggcgggatccccacgcatcacc
ccagccagcccccgctggaggggaaacatggactggcctcatggaggagacgcccccacc
accgcctccactgacaaagactcccataggaaaccagttgtgtccaggaggaacaacctg
tggtccatcctcatccccattctggtcctcctgctcctcctcctgctggcagccatcttg
gctttctacctggtgcgtcgcaacaagacgggcaaacacaatgtgcagacggtggccggc
tccaagcccaaaaacggagaggtcagccaggagaccttccggaaaaccgacccggccaat
aacatccccatgtcccaaatggactccaaagacgccgacccggagttgctgcagcactgt
cggacaacgaacccggcgttaaaaaagaaccagtactgggtatga
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integrated database retrieval system
