Coregonus clupeaformis (lake whitefish): 121532146
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Entry
121532146 CDS
T08357
Name
(RefSeq) laminin subunit beta-1-like
KO
K05636
laminin, beta 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04510
Focal adhesion
cclu04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121532146
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121532146
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Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
LAMININ_IV_B
Laminin_N
EGF_LMN_ATRN
LAMB1
F5_F8_type_C
ATG17_like
Motif
Other DBs
NCBI-GeneID:
121532146
NCBI-ProteinID:
XP_041693827
LinkDB
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Position
19:37245360..37282905
Genome browser
AA seq
1785 aa
AA seq
DB search
MLIFQMAILLSAGACVLAQVPEFSDVCTEGSCYPATGDLLIGRAHQLSANSTCGLHRPEP
FCIVSHLQEEKKCFVCDSTDVYVKSVVNATTGHRVENVVTTFAPNRLKTWWQSENGLEKV
TIQLNLEAEFHFTHLIMTFKTFRPAAMVIERSADFGQNWQVYRYFAYDCESAFPAISSGP
MQKVDDVICDSHYSDIEPSTEGEVIFRVLDPVFRIEDPYSPRIQNMLKITNLRVKFTKLH
TLGDNLLDSRMEIKEKYYYAVYDLVVRGNCFCYGHASECAPVDGAGDVVEGMVHGHCMCN
HNTMGLNCEKCQDFYHDLPWRPAEGRNTNACKKCNCNQHSDSCHFDMAVYVSTGNGSGGV
CDECQHNTMGHNCEQCKPFYFQHPERDIRDPSICESCNCDPVGSLNGGICDRMTDVSSGL
ISGQCRCKPNVEGERCDQCKQAHYGLGDHPLGCLACTCNALGTVPGGNPCDTDSGDCYCK
RLVTRRDCDQCMPQHWGLSNDMDGCRPCDCDLGGAINNDCSQETGQCVCREHMFGRRCDQ
VESGFYFIALDHYTYEAEDAKFGPGVTVVQRPHPQDRSPTWTGVGFVNVPEGAYLEFSID
NIPHSMEYDILIRYEPQLPDQWEEVLMTVMRPSVISADSRCANTMPDDDNQMISLHPGSR
YVVLPRPVCFEAGMNYTVRLSLPLYSALSDIQSPYTLIDSIVLMPHCKNLEIFTGSEGGN
LATNSAWDTFQRYRCLENSQSVVKTPSTDICRNFIFSVSALLHQGAKACQCDPQGSLSTV
CDASGGQCQCRPNVVGRNCDKCSPATYLFGPSGCRSCDCSPQGSEHAFCHEATGQCACVP
GAYGRQCDRCLPGHWGFPNCRPCTCNGHTEQCDPYSGECLDCREQTTGHNCERCLEGYYG
DPVLGSGDHCRPCMCPDGPGSGRQFAGGCYRGLDSHYQVFCICSPGYRGARCEECAPGYY
GNPHENGGQCQPCQCNNNIDMLDQESCDARTGECLKCLYHTEGQGCHSCKLGYYGDALTQ
NCRKCVCNHLGTNPATCPSVGDCHCDLGSGQCQCLPNVVGQHCDLCAPDTWNMASKRGCE
ACDCDPNHSFGTSCNELSGQCSCKPGFGGKTCRECRELFWGDPEVKCNACDCDPRGIAEQ
QCNKANGHCVCLEGVSGPRCDVCARGYSGTFPYCERCHQCFTDWDVIVGQLTNQTHRLVN
KVNTIKASGITGPYKHTIDNMEQSAGAIRTILAQNPATQPLSEIQQLLEQATDLMEEMSN
KLNLSEEALAQVSSDDNSTNTKLDSLKEDAQKLDRTVKELLDQVELIKNSDVRGATDSVT
KYYKQSLAAEAHANASTTGPGNPVESSFVLRQATEDKMNDTREEFHRRQEEHAKRLDDLA
DQLETLDLSELSEKTCGSPAGEVCADSLCGGLSCVDSDGNRRCGGEGCNGLVTLANNAWH
KAKDFDQEILMAMQEVDKLSKMVSEAKVKADEAKLSAQDVLLKTNKTKQRVAQSNEELRS
LIRQIRDFLTQDAADMESIEAVANEVLAMQMPSTPAQLQNLTDEIRERVGDLAQVETILN
QSADDVQRAESLLEQARRASKEATDVRETAEMVKQALEEAERAQKAAAEAIKQATTDING
TNDLLTSVESETADSEYKLNNTTQRLLRLEQDITLLREKTLNTSLSSEQTERDAETINKV
AEQVKKDLDSELKDKYSTVQDLIKQEAGGVADAKKRAELLQQEATDLLLQASDKLQLLKD
LEKSYEDNQKTLEDKANQLVDLEKAVKELLQEISHKVTVYSTCLF
NT seq
5358 nt
NT seq
+upstream
nt +downstream
nt
atgttgatatttcaaatggcgatcctgctatccgcaggggcgtgcgtccttgcccaggta
ccagagttcagcgatgtgtgcacggaggggagctgctaccccgccacgggagaccttctc
atcggcagagcccaccaactctccgccaactccacatgcggcctccaccggcccgagccg
ttctgtatcgtcagtcatttacaggaggagaagaaatgctttgtgtgtgactccaccgac
gtctatgtcaaaagtgtggtgaatgccaccaccggccaccgggtggagaatgtcgtgacc
acattcgcccccaaccgcctgaaaacctggtggcagtcagagaatggtcttgagaaagtg
accatccagctgaacttggaggcagagtttcatttcacccacctcatcatgaccttcaag
accttcaggcctgctgccatggtgattgagcggtcagctgactttgggcagaactggcag
gtgtaccgctactttgcctatgactgtgagtccgcattccctgccatatcctcggggccc
atgcagaaagtggatgatgtcatctgcgattcacattactccgacattgaaccatcgaca
gagggagaggtcatcttccgagttttggatccagttttccgtattgaagatccctacagc
cccagaatccaaaacatgttgaagatcaccaacctgagggtgaagttcaccaagctgcac
actctgggagacaacctgctggactcccgcatggagatcaaggagaagtactactatgct
gtctacgacttggtggtccggggtaactgcttctgctatggacacgcctcagagtgtgcg
cccgtcgacggggctggcgatgttgtcgagggcatggtccatggccactgtatgtgcaac
cacaacaccatggggctgaactgtgagaagtgtcaggacttctaccatgacctgccctgg
agaccagccgagggacgcaataccaacgcctgtaaaaaatgtaactgtaaccagcactca
gactcgtgtcacttcgacatggcagtatacgtctccacgggcaatgggagcggtggtgtg
tgtgatgagtgccagcacaacactatgggacacaactgtgaacagtgcaaacccttctac
ttccagcacccagagagggacatccgtgaccccagcatctgtgaatcgtgtaactgtgat
ccggtgggctctctgaatggcgggatctgtgacaggatgactgatgtgtcgtctggactg
atctctggccagtgtcgctgcaagcccaatgtggagggagagcgctgtgaccagtgcaaa
caggcccactacggcttgggagaccaccctctgggctgcctggcctgcacctgtaatgcc
ctggggacagttcctggagggaacccatgtgatacagactcgggagactgttactgcaaa
cgcctggtcaccaggagggactgtgaccagtgtatgcctcagcactgggggctaagcaat
gacatggatggctgcagaccatgtgactgtgacctaggtggagccatcaataatgattgt
tcccaggagactggtcagtgtgtgtgtcgagaacacatgtttggcaggcgctgtgaccag
gtggagtcaggcttctacttcatcgccctggaccactacacctacgaggcagaggacgcc
aaatttggacctggtgtgacagtagttcagagaccccaccctcaggaccgtagccccacc
tggacaggggtaggtttcgtcaatgttcccgagggggcctacctggagttctccatcgac
aacatcccccactccatggagtacgacatcctcatccgctacgagcctcagttaccagac
cagtgggaggaggtgttgatgacagtgatgcggcccagtgtgatctcagcagacagtcgc
tgtgccaataccatgcctgacgacgacaaccagatgatatccctccaccccggatcacga
tatgtggtgctccccagaccagtgtgtttcgaggcagggatgaactacacagttcgtctg
agtctgcccctctactctgcactcagcgacatccagtccccatatacactcattgactcg
attgtgctgatgccccactgtaagaacctggagatcttcactggttctgagggcggtaac
ttggccaccaacagtgcctgggacaccttccagcgctaccgctgtctagagaacagccag
agcgtagtgaagaccccctccacagacatctgccgcaactttatcttcagcgtatccgct
ctgctgcaccagggagctaaagcatgccagtgtgacccgcagggctctctcagcacagtg
tgtgacgccagcggcgggcaatgccagtgtcgtcccaacgtggtaggcaggaactgtgac
aagtgttcccctgccacctacctgtttggacccagtggctgcagatcctgtgattgcagt
ccccagggatcggagcatgcgttctgccatgaggctacaggccagtgtgcttgtgtcccc
ggggcgtacggccgtcagtgtgaccgctgtctgccgggtcactggggcttccccaactgt
cgcccctgcacctgcaatggccacacagagcagtgtgacccctactccggagaatgcctg
gactgccgagaacagaccaccggacacaactgcgagaggtgtctggaaggttactatggt
gaccctgtcctgggttcaggggaccactgtcgtccctgtatgtgtccggatgggcccggt
agcgggcggcagtttgccggtggatgttaccgcggtctggactctcactaccaggtgttt
tgtatctgcagccctgggtacagaggtgccagatgtgaggagtgtgccccaggttactat
ggaaacccccatgagaacggcgggcaatgccaaccgtgccagtgcaacaacaacattgac
atgctggaccaggagtcctgtgatgccaggacgggtgaatgtctcaaatgtctctaccac
accgagggtcaaggctgccacagctgcaagctgggttactatggggatgccctcacacaa
aattgcagaaagtgtgtgtgtaaccacctgggcaccaacccagccacatgcccgtcggtg
ggcgactgccactgtgatctgggcagtgggcagtgccagtgtctaccgaacgtggtgggt
cagcactgtgacctgtgtgcccccgacacctggaacatggccagcaagaggggctgcgaa
gcctgcgactgtgaccccaaccactcatttggaacatcctgcaacgagctgagtggccag
tgctcctgtaaacctggctttgggggtaaaacgtgtcgggagtgcagagagctgttctgg
ggagaccctgaagtcaaatgcaacgcgtgcgactgtgacccacgaggcatcgccgagcag
cagtgcaacaaggccaacggtcactgcgtgtgcttggagggcgtgtctggtccccgctgt
gacgtctgcgcccgcggctactctggcaccttcccctactgtgaacgctgccaccagtgc
ttcaccgactgggacgtgatcgtgggtcagctgaccaaccagacccacaggctggtcaac
aaggtgaacaccatcaaggccagcggcatcaccggaccctacaaacacaccatagataac
atggagcagagcgccggggccataagaactatcctggcccagaacccggctacacagcca
ctgtctgagatacagcagctactggagcaggccacagatctaatggaagagatgagcaac
aagctgaacctctctgaggaggcgttggcccaggtatcatctgatgacaacagcaccaac
accaaactggactctctcaaagaggacgcccagaaactggatcgcaccgtcaaggagctg
ctggaccaagtggagctcatcaagaactctgatgttcggggagcgacagacagtgtcaca
aagtactacaagcagtctctggctgctgaggctcacgccaatgcctccaccaccggccca
ggcaaccctgtggagagctctttcgttctacgacaagctacagaggacaagatgaatgac
accagggaggagttccacaggaggcaggaagaacacgccaagagactggacgacctggcg
gatcagctggagacattggacctatcagaactcagcgagaagacgtgtggtagcccagct
ggtgaggtgtgtgcagactctctgtgcggggggctgagctgtgtggactctgacgggaac
aggaggtgtgggggtgaggggtgcaacggtctggtcaccctggccaacaatgcctggcat
aaggccaaggactttgaccaggagatcctcatggccatgcaggaggtggacaagctctcc
aagatggtgtcggaggccaaggtgaaggcagacgaggccaagctgagtgcccaggacgtg
ctgctgaagacaaacaagaccaagcagcgcgtggcccagagcaatgaggagctgcgcagc
ctcatccgacagatcagagacttcctcacacaggatgcagcggacatggagagcatcgag
gcagttgccaacgaggtgctggccatgcagatgcccagcacgccagcccagctccagaat
ctgacagacgagatcagggagagggtgggagacctggcccaagtggagactatcctgaac
cagagcgccgacgatgtgcagagagccgagagcctactggagcaggcacgcagagccagt
aaagaggcaacagatgtgagggaaacagcagagatggtgaagcaggctctggaagaggct
gagcgtgcccagaaagcagcggccgaggccatcaaacaggccaccaccgacatcaatggc
accaatgacctcctgacctcagtggagtcggagacagcggactcagagtacaagctgaac
aacaccacccagaggctgctccggttagagcaagacatcacactgctcagagagaagaca
ctgaacacctcgcttagctctgaacaaaccgagagagacgcagagaccatcaacaaagtg
gctgagcaggtcaaaaaggacctggactcggagctgaaggataagtacagcactgtgcag
gacctgatcaaacaggaggccgggggcgtggccgacgccaagaagagggcggagcttcta
cagcaggaagccacagacctgctgctacaggccagcgacaagctgcagctactgaaagat
ttagagaagtcctacgaggacaaccagaagactctggaagacaaggccaaccagttggtg
gatctggagaaggctgtcaaagagctgctgcaggagatcagtcacaaagtcactgtgtac
agcacctgtctgttttaa
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integrated database retrieval system