Coregonus clupeaformis (lake whitefish): 121532158
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Entry
121532158 CDS
T08357
Symbol
irx5b
Name
(RefSeq) iroquois-class homeodomain protein IRX-5b
KO
K24889
iroquois-class homeodomain protein IRX
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121532158 (irx5b)
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain TALE
121532158 (irx5b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Homeobox_KN
Homeodomain
PGA2
MRP-S32
Motif
Other DBs
NCBI-GeneID:
121532158
NCBI-ProteinID:
XP_041693847
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Position
19:complement(37809566..37813104)
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AA seq
449 aa
AA seq
DB search
MAYPQGFLFQPSVSLALHSCPPFSSSVILGRPRTDEMGRPSSGSAFAPYAGSPAFNGSSP
GFNSYLQYSGEQRAAMNSFVGSAYDPSAGITGSLEYHPFGGALGPYPYGDPAYRKNATRD
ATSTLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWNPRN
RSEDEEEDDNIDLEKNDDDDEPLKPTTEIGSKNEADGHHPNPVGISCEKYKEDNSSNDME
PVLTDSDLKENGDRSVPEMLGPTITASPQNLHLGAERDSDSADTPGPPAPRRNDTGNSSN
ATSVIDSPLPAPKPKLWSLAEIATSSDKCKGCSDGAQNVPGQLRTEIPARLSSPPRAAPH
NLFPHSAALSRHVYYTSPFFQGYSNYHGTFGQLHSPGSNVGSATHLNGLHQTMLHRAEAL
ARDSKARSQTQIDICKDLRYELKKGMTHV
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atggcttatcctcagggctttctcttccaaccgtcggtttctctggctctccattcctgt
cccccgttcagttccagtgtgattttaggaagaccgaggacagatgaaatgggccggccg
tcttcaggctcagccttcgcgccgtacgcaggatcaccggctttcaatggctcatcgcct
ggcttcaactcttaccttcagtacagcggagagcagagggcagcaatgaactcgtttgtg
ggctccgcgtatgatccttcagcgggcattactggctctttagaatatcacccgtttggt
ggtgcattgggcccatatccatacggcgaccctgcatacaggaaaaatgctacacgggat
gcgacttccactctcaaagcgtggctcaatgaacatcgcaaaaacccttatcccaccaaa
ggcgagaaaatcatgctggcaatcatcaccaagatgacccttacccaagtgtccacctgg
ttcgccaacgccagaaggcgtttgaagaaagagaacaaaatgacgtggaacccgagaaat
agaagtgaggatgaggaagaggatgacaacattgacctggagaagaatgacgacgacgat
gagccactcaagcccacaacagaaattgggtcgaaaaatgaagcagatggacatcatcca
aatccagtgggaatctcctgtgagaaatacaaagaggacaatagtagcaatgacatggaa
cctgtcttaactgattcggatttaaaggaaaacggggacaggagcgtgcccgagatgctg
gggcccactatcacagcatccccccaaaacttgcaccttggagcggagagggattcagac
tcggcggacacgccaggtccacctgcaccgaggcgtaatgacacaggcaactccagcaat
gccacgtcagtgattgactcgccccttccagccccaaaaccaaaactgtggtcgctcgcg
gagattgcaacttcttcggacaaatgtaaaggatgtagcgatggtgctcagaacgtgccc
ggacaattacgcacagagattccggcccgtctgtcatctccaccgcgagccgctcctcat
aatcttttccctcacagcgcagctctctcaagacatgtctattatacatctccctttttc
cagggttactcgaactatcatggcacttttggacagctgcacagccccggatccaacgtg
gggtcagcgacacatttaaatggattacatcaaactatgttacacagagccgaggcactg
gcaagagacagcaaagccaggagccaaacacagatagatatttgtaaagacttgagatat
gaacttaagaaaggtatgacacatgtttag
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