Coregonus clupeaformis (lake whitefish): 121532168
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Entry
121532168 CDS
T08357
Name
(RefSeq) transcription initiation factor TFIID subunit 4-like isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121532168
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cclu03021
]
121532168
03036 Chromosome and associated proteins [BR:
cclu03036
]
121532168
Transcription machinery [BR:
cclu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
121532168
Coactivators
SAGA/TFTC/STAGA complex
121532168
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
121532168
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
Motif
Other DBs
NCBI-GeneID:
121532168
NCBI-ProteinID:
XP_041693861
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All DBs
Position
19:38244722..38265114
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AA seq
998 aa
AA seq
DB search
MAGASDPLEDMLFNEVDEKAVSDLVGSLESQLVSQKTSPATYSNIKREGSTGAVSQFSGK
LRDQVGSLEPPQQGHPKAVLNAEPIANQAISNKIITTSTSSITTGGVLHAGTNLQTYGAA
SQTISTAPPGSVTLSAQPTSFNRGTVLGPAGTSVVTAPNPNITTTTTIRTASPGLQSFNG
STVAVKLVNSPAASEVGSGSSTVISTVSAGNSNIIVSMTSQPPSLPNFPGPQQSAVATTP
TIALQRQPNLMAIASQNGVIDPKVSAVVTQGAGSLGATTTQVMNHSNTLMHTKMVAPNQP
VSAGQSIILGGSPSPVVVNSPISQAQSVGSPTLTAGVKPTVNGVGQPTVTIVRPPGAPVM
ATSVQQQRPGLLASTTRTAAPQLAIRPPQKTTIQLPPGFTIPPGMVLVRTDTGQLVMVPQ
QVLAQAQAKTQQGQAAVSNISPQPGTPTAGATRVSTPSQAPGTPQAVRLASPFQARMAQS
PSPSSPAIQKAITMAPAGASVSVKMTTPQKAQSVITGGQAMVKPGAVRPTITLNTPAASA
SASPTTGTAPVSQEMQENVKKCKNFLSTLIKLASHNSPSPDTSKNVKTLVQDLLDAKIEP
EEFTTSLQAELKSSPQPYLIPFLKKSLPALRLSLLNNQQSLLASTSASALAIPSTTTIRA
RLPTTVSPATGIVRTPTTALGVRRAGVQGVQTRMPMVISQTIRPQGVVTRGPAIIPGRSP
VGIGAQASANQKKLNEPGGGTFRDDDDINDVASMAGVNLNEENARIMATNSELVGTKIRS
CKDEAFLPPGLLHRRIMETAKRFGVTEVPAETVNYISHATQARLRSMLEKVSTIAQHRTD
GGKDEEWYEPSTDVRAQLRFFEQLDRMEKQRKDEQEREVLLKAAKSRARQEDPEQARLKA
KAKEMQQAEQAQIRQREANLTALAAIGPRKKRKMDSPGSSTSGTEVASGSGDGSSTAVSS
RQQLRQRITRVNLRDFIFCLEQERATSRSLLLYKALLK
NT seq
2997 nt
NT seq
+upstream
nt +downstream
nt
atggcgggagcctccgacccactggaggacatgctcttcaatgaggtagacgaaaaagct
gtaagtgacttagtgggctctttggaatcgcaacttgtcagccaaaagacttcgcccgcc
acatattccaatatcaagcgagaaggatctacgggggctgtcagccagttctcagggaaa
ctgcgtgatcaagtggggtctctggagccgccacaacaaggacacccaaaagcggtgtta
aacgcggaacccatcgcgaatcaggcgatttccaataagattatcaccacttctacctct
tccatcactactgggggtgttctacacgctggtaccaatctacaaacatatggagccgca
tctcaaaccatttccaccgcaccaccaggatcagtaactttgtctgctcagccgactagc
ttcaacagagggactgttttgggtcctgctggcacatcggtggtgactgctcccaaccca
aacatcacaacaacaacaactatcaggactgcttcacctggtttacagagttttaacggt
agcactgtagctgtgaagttggtcaactcgccagcagcttctgaagttgggtcaggcagc
agcactgttataagtactgtcagtgcgggcaactccaatatcattgtgtccatgacttca
cagcctccttctctgccaaactttcctggacctcaacaatctgcagtggctactactccc
actattgcattgcaaagacagcccaacctcatggccattgcctcacagaatggagtaata
gaccccaaggtttctgcagtggtcacacagggtgcaggttccctaggggccaccaccact
caggtcatgaaccacagtaacactctcatgcacactaaaatggtggcacccaaccagcca
gtctctgctggccaatcaataattcttggagggtctccctctcctgttgttgttaactca
ccaataagccaggcacagagtgtggggagtcccactctcacagctggggtgaaaccaacg
gttaatggagttggtcaacccacagtgaccatcgtgaggccgcccggtgctcctgtgatg
gccacctccgtacagcagcagagacctgggctgttggcaagtaccacgaggactgctgca
ccacagctggccatcagaccaccacagaagaccaccattcagttaccccctggatttacc
ataccacccggtatggtgctggtgcgtacggacacgggccagctggtgatggtgcctcag
caggttctagcccaggcccaggctaagacccaacaaggccaggctgctgtctccaacatc
tccccccagcctggaacccccaccgctggggccaccagagtcagcactcccagccaggcc
cctggtacgccccaggctgtccgtctggcatcccctttccaggcaagaatggcgcagtcc
ccctctccctctagccctgctatacagaaggccataaccatggctcctgcgggtgcgtct
gtgtcagtgaagatgaccacccctcagaaggcccagtcggtgatcacggggggccaggcc
atggtcaagcctggtgctgtacggcctactatcaccctgaacactcccgcagccagtgcc
tccgcatcccctaccacaggaactgcaccagtctcccaggaaatgcaagagaatgtgaag
aagtgcaagaacttcctgtccaccctgatcaagctggcgtcccacaactccccctcccct
gacacatccaagaacgtcaagaccctggtgcaggatctactggatgctaaaatcgagcct
gaggagttcaccacgagtctgcaggctgagctgaaatcctctccacagccgtacctcatc
cccttcctcaagaaaagcctccctgccctgcggctgtctcttctcaacaaccagcagtct
cttctggcctccacctccgcttctgccctggccatcccctccaccaccaccatcagggcc
cggctccccaccaccgtcagccccgccacgggcatcgtcaggacacctactactgccctg
ggtgtgagaagagcaggagtccagggagtccagacccgcatgcccatggtcatcagtcag
accatacgaccacaaggcgtagttacaagaggacccgctattatcccaggcagaagtcct
gtgggcattggtgcccaggcctctgccaatcagaagaagctgaatgagcctggaggtggg
acgttcagagatgatgatgacatcaacgacgtggcgtccatggcgggggtgaacctgaac
gaggaaaacgcccgcatcatggccaccaactctgagctggtgggcaccaagatccgctcc
tgtaaggacgaggccttcctcccgccaggcctgctgcacagacgcatcatggagactgcc
aagaggtttggggtgaccgaggtcccagctgagaccgtgaactacatctcccatgctacc
caggccaggctgagatccatgctggagaaagtgtccactatcgcccagcaccgcaccgac
gggggcaaggatgaggaatggtatgagccgtcgacagacgttagggcccagctccgcttt
tttgagcagctggacagaatggagaaacagaggaaggacgaacaggagagagaggtccta
ctcaaggctgccaagagtcgcgccagacaggaggacccagaacaagctcggttgaaggcg
aaagctaaggagatgcagcaggcagagcaggcccagatccgtcagcgtgaagccaacctc
actgccctggctgccatcgggccccgcaagaaacgcaagatggactcgccagggagctcc
acatcgggcacagaggttgcttcgggttcaggggacggctcttccacagccgtctcctcc
cgccaacagctccgtcagcggatcacgcgagtcaacctcagggactttatcttctgcctg
gagcaggagagggccacatccaggtccttactgctctataaggctctcctgaagtag
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