Coregonus clupeaformis (lake whitefish): 121532193
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Entry
121532193 CDS
T08357
Name
(RefSeq) interferon regulatory factor 3-like
KO
K09447
interferon regulatory factor 7
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04620
Toll-like receptor signaling pathway
cclu04621
NOD-like receptor signaling pathway
cclu04622
RIG-I-like receptor signaling pathway
cclu04623
Cytosolic DNA-sensing pathway
cclu05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
121532193
04621 NOD-like receptor signaling pathway
121532193
04622 RIG-I-like receptor signaling pathway
121532193
04623 Cytosolic DNA-sensing pathway
121532193
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
121532193
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121532193
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters interferon-regulating factors
121532193
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IRF-3
IRF
Motif
Other DBs
NCBI-GeneID:
121532193
NCBI-ProteinID:
XP_041693910
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All DBs
Position
19:complement(47761025..47767302)
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AA seq
460 aa
AA seq
DB search
MTEVRGSALKMQSRKPKPQFADWLIEQVLTGQYAGLCFVDNNKFRVPWKHISRKDCCEDD
SKIFRAWAVVSGKINTHPNDKAKWKANFRSVLNNLTKRFMMVEDHSKDSDDPHKVYLIIN
NEYNYKSPHIEEIAVEDYDIDIYSSLTSTGYTPPGMEHDDLLKLVNTLDLNEHTEEQQWA
ENYIHTHHPVVPEDCYPFQPLTEPQPVSQIHSTPPVPVAVQQPDYHSMQVNQDALLNLPA
AQPSLLDLEITISYRRREMLKTQVSGPRVQLHYQCDAPEPNAQTLCFPSTDGLLDHKQIE
YTNRILGSVQRGLLLEIRNTGIYGYRQDKCHVFSSTSDPREAHPEPRKMPQNEMVQLLSF
DKYMSELIAFKENRGGSPDYTIHMCFGEKFPDGKPLEKKLIIVKVVPLICRHFHEVAQGE
GASSLQNDNISLQISHHNSLMELISATWLDGPEHTMEQYF
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgacagaagtacgcggctcagcattaaagatgcaaagccgcaagcccaaacctcagttt
gccgactggctgatagaacaggtgttgaccgggcaatacgccggtttgtgctttgtggac
aacaacaagttcagagttccgtggaaacacatctctaggaaggactgctgcgaggacgac
agtaaaatattcagggcatgggcagtggtcagtggtaaaatcaacacgcatcccaatgac
aaggcaaagtggaaggctaactttcgcagtgtactgaacaacctgaccaagcgtttcatg
atggtggaagaccactccaaggactcagacgacccccataaagtctacctgattatcaac
aatgagtataactataagagcccgcacatagaggaaattgctgtggaggactatgacatt
gacatctacagctctctcacttctacaggctacacccccccaggaatggagcatgatgat
ctactcaagcttgtgaacacgttagacctgaacgaacatactgaggagcagcagtgggca
gagaactatatacacacacaccacccagtggtaccagaagactgctaccccttccagcct
ctaacagagcctcagccagtctcccagatccactcaacaccacctgtcccagtagcagta
cagcagccagactaccacagtatgcaagtgaaccaggatgccctgctcaacctgcctgct
gcccagccgtctctcttggacctggagatcaccatctcctacaggaggagagagatgctg
aagacccaggtgtcaggccccagggttcagctccactaccagtgtgatgcccctgagccc
aacgcccagaccctctgcttcccaagcactgacggcctgctagaccacaaacagattgaa
tacaccaaccgcatcctagggagcgtccaaaggggtcttctcctggagatacgaaatacg
ggtatctatggttaccggcaggacaaatgccatgtgttctccagtactagtgaccccaga
gaggcacaccctgaacccaggaagatgccccaaaatgaaatggtacaactgttgagcttc
gacaagtacatgagtgagctgatagcatttaaggagaacagaggaggctctcctgactat
accatccacatgtgctttggagagaagttcccagacggaaaacccctggagaagaaactc
atcattgtcaaggtggttcccttgatctgtcgtcacttccacgaggtggcccagggggag
ggggcgtcttccctccagaacgacaacatcagcctgcagatctcccaccacaacagcctg
atggagcttatcagtgccacctggctcgacggcccagagcacaccatggagcaatacttc
tag
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