Coregonus clupeaformis (lake whitefish): 121532205
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Entry
121532205 CDS
T08357
Symbol
lrrc4ca
Name
(RefSeq) leucine rich repeat containing 4C, genome duplicate a
KO
K07523
netrin-G1 ligand
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
121532205 (lrrc4ca)
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Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
Ig_3
ig
V-set
LRR_14
Ig_2
LRR_9
LRRNT
DUF7617
Sp38
Ig_6
FlK
Syndecan
Motif
Other DBs
NCBI-GeneID:
121532205
NCBI-ProteinID:
XP_041693926
LinkDB
All DBs
Position
19:49431169..49517422
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AA seq
645 aa
AA seq
DB search
MLNKMTSSWQQQTMRGPRWNRVLSDPLFVLLLALQLLAVAGLVRAQTCPSVCSCSNQFSK
VICTRRGLRDVPDGISTNTRYLNLQENLIQVIKVDSFKHLRHLEILQLSKNHIRNIEIGA
FNGLASLNTLELFDNRLTTIPNGAFEYLSKLKELWLRNNPIESIPSYAFNRVPSLRRLDL
GELKRLSYISEGAFEGLSNLRYLNLGMCNLKEIPNLIPLVKLDELEMSGNQLTVIRPGSF
KGLIHLQKLWMMHAQIQTIERNSFDDLQSLVELNLAHNNLTLLPHDLFTPLHHLERVHLH
HNPWNCNCDILWLSWWLKEMVPANTSCCARCSSPASHKGRYIGELDQNYFHCYAPVIVEP
PADLNVTEGMAAELKCRASSLTSVSWITPNGSIMTHGAYKIRISVLNDGTLNFTNVTMQD
TGTYTCMVSNSAGNTTASATLNVSSTENVLSYFTTVTVETIEPVHDEGRTTVGQKVGPTP
SAGSWETVSSTSTTTTTARTPLSTRATEKTFTIPVTDLNGGSMTGLDEVMKTTKIIIGCF
VAITLMAAVMLIIFYKMRKQHHQQNHHAPQRTIEIINVDEDCVTGGPAMEGHLTLPPLEH
EHLNHYNTYKTAYNHVSTINSIHSSAHEPLLIRANSKDNVQETQI
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgttgaacaaaatgacctcttcttggcagcagcagacgatgagaggtcctaggtggaac
cgggtcctgtccgaccctttgttcgtgctgctcctggccctccagctcctggcggtggcg
ggcctggtgcgcgctcagacctgcccttccgtctgctcctgcagcaaccagttcagcaag
gtgatctgcacccggcggggactacgtgatgtcccagacggcatctccaccaacacacgc
tacctgaaccttcaggagaacctcatccaggtgatcaaggtggacagcttcaagcacctg
cggcacctggagatcctgcagctcagcaagaaccacatccgcaacattgagattggggcc
ttcaatggcctggccagtctcaacaccctggagctgttcgacaaccgcctcaccaccatc
cccaacggggcctttgagtacctctccaagctcaaggagctgtggctgaggaacaaccca
atcgagagcattccctcgtatgcgttcaacagggtgccctcgctacggaggctggactta
ggggaactgaaacgcctctcgtatatatcagagggggctttcgagggcctcagcaacctg
cgctacctgaacctgggcatgtgcaatctgaaggagattcccaacctcattcctttggtc
aagctggacgagctagagatgtcggggaaccagttgactgtcatcagacccggctccttc
aaagggctgatccacctgcagaagctgtggatgatgcatgcccagatccagaccattgag
aggaactcctttgacgacctgcagtcgcttgtggagctcaacctggcccacaacaacctc
accctgctgccccatgatctcttcacccccctgcaccacctggagagagtccacctccac
cacaacccctggaactgcaactgtgacatcctgtggctcagctggtggctcaaagagatg
gtgccggccaacaccagctgctgcgcacgctgcagttccccagcaagccacaaggggcgc
tatataggtgagctggatcagaactatttccactgttatgcaccggttatcgtagagcct
ccggctgacctcaacgtgacagagggcatggcagcagagctgaagtgcagggccagctct
ctgacatcagtcagttggattacacccaacggctccatcatgactcatggtgcatacaag
atccgcatttccgtgcttaacgatggcacgcttaacttcaccaacgtcaccatgcaggac
acaggcacctacacctgcatggtgagcaactcagcgggcaataccacagcatctgccacg
ctcaacgtgtcatccacagagaatgtcctcagctactttaccacagtgacagtggagacc
atagagccagtgcatgacgaggggcgcaccaccgtggggcagaaggtgggccctacccct
tctgccggctcctgggagaccgtctcatccacctctaccaccaccaccacggcccggacg
cccctctccacccgggccacagagaagacctttaccatccccgtcacagacctgaacggc
ggctccatgaccggcctggacgaggtgatgaagaccaccaagatcatcatcggctgcttc
gttgccatcaccctcatggccgccgtcatgctcatcatcttctacaagatgaggaagcag
caccaccagcagaaccaccatgcgccccagcgcaccatcgagatcatcaacgtggacgag
gactgtgtgacgggcgggccggccatggagggccacctgactcttcccccgctcgagcat
gagcacctcaaccattacaacacctataagactgcgtacaaccacgtctccaccatcaac
tccatacacagctcggcgcacgaacctttgttaatccgggccaactcgaaagacaatgta
caagagacccagatctaa
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