Coregonus clupeaformis (lake whitefish): 121532209
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Entry
121532209 CDS
T08357
Symbol
rag1
Name
(RefSeq) V(D)J recombination-activating protein 1
KO
K10628
V(D)J recombination-activating protein 1 [EC:
2.3.2.27
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04068
FoxO signaling pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04068 FoxO signaling pathway
121532209 (rag1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cclu04121
]
121532209 (rag1)
Enzymes [BR:
cclu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121532209 (rag1)
Ubiquitin system [BR:
cclu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
121532209 (rag1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RAG1
RAG1_imp_bd
zf-C3HC4
zf-C3HC4_2
TRAF3_RING
zf-C3HC4_4
zf-RAG1
zf-RING_UBOX
zf-RING_6
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
121532209
NCBI-ProteinID:
XP_041693936
LinkDB
All DBs
Position
19:complement(50341992..50349135)
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AA seq
1078 aa
AA seq
DB search
MEEGTLEKNAPRCSMPAELHHPYSKFSDWKFKLFRVRSMERAPLPGETQPERGALSGVVA
SAPLGETVGDVVGLPGSVMKLCLGGKSKENVEGPGKRVDLKLQEMDTHMNHLRCLCRLCG
GALRKAKGPEHEVQGLLDEASRSALRRMGCKATSWPEVILKVFKVDVTGDMEVVHPSFFC
QRCWTLAMRGGGFCSFSRTHVPEWRPHTTLCLLCHPKKPSLQRRGRKRRKPTRGAQRMAK
RTKWDLQDNAATIGEKRAWRTVTDPHQGPGLRPWVRSSVQRAQWVKSITLCQKEHLSVRL
LSEDLPVDFLSSVTCQVCDHLLSEPVQSPCRHLFCRSCIAKYICSLGPHCPACTLPCRPA
DLTAPAKGFLGVLHSLPLLCPRESCGERVRLDSFRAHCLGHQLEEDNGEQRSPEKSLDNF
LPVNKGGRPRQHLLSLTRRAQKHRLRDLKTQVKVFAEKEEGGDTKSVCLTLFLLALRAGN
EHRQADELEAMMQGRGFGLHPAVCLAIRVNTFLSCSQYHKMYRTVKATSGRQIFQPLHTL
RAAEKELLPGYHPFEWQPALKSVSTSCHVGIIDGLSGWVASVDDSPADTVTRRFRYDVAL
VSALKDLEEDIMEGLRERGLEDSACTSGFSVMIKESCDGMGDVSEKHGGGPAIPEKAVRF
SFTIMSISIQAEGEDEAITIFREPKPNSEMSCKPLCLMFVDESDHETLTGVLGPVVAERN
AMKHSRLILFVGGLSRSFRFHFRGTGYDEKMVREMEGLEASGSTYICTLCDSTRAEASHN
MTLHSVTRSHDENLERYELWRTNPYSESAEELRDRVKGVSAKPFMETQPTLDALHCDIGN
ATEFYKIFQDEIGEVYHKANPSREQRRSWRAALDKQLRKKMKLKPVMRMNGNYARKLMTR
EAVEAVCELVHSEERQEALRELMGLYLQMKPVWRSTCPAKECPDQLCRYSYNSQRFAELL
STVFKYRYDGKITNYLHKTLAHVPEIVERDGSIGAWASEGNESGNKLFRRFRKMNARQSK
TFELEDVLKHHWLYTSKYLQKFMEAHKNSAKALQATIDTMESQETQEDADMSLDVPDF
NT seq
3237 nt
NT seq
+upstream
nt +downstream
nt
atggaggaggggaccctggagaaaaatgctccccggtgctccatgccggccgagctccat
cacccctactccaagttctcagactggaagttcaagctgttccgggtcaggtccatggag
agggccccgctgcccggggagacgcagcccgagagaggggccttgtctggggttgtggcc
tctgcacccctgggggagacggtgggggatgtggtgggtctcccagggagtgtgatgaaa
ctgtgcctggggggtaagagcaaggagaacgtggaggggccgggaaagagagtggacctg
aaactccaggagatggacacacacatgaaccacctcaggtgtctgtgtcgtctctgtggc
ggggccctgaggaaagccaaaggtccagagcatgaggtccaagggcttctggacgaggca
agcaggagtgccctgcgcaggatgggctgcaaggccaccagctggccagaggtcatcctc
aaggtcttcaaagtggacgtgacgggggacatggaggtcgtccacccgtcgttcttctgc
cagcgctgctggacattggccatgcgaggagggggcttctgcagcttctccaggacccat
gtccctgagtggagaccccacaccaccctctgcctcctctgccaccccaagaaaccctca
ctacagaggagagggaggaagaggaggaagcccactcgtggagcccaacgcatggccaag
aggaccaagtgggacctccaggataacgctgctactattggtgagaagagagcctggaga
acagtgacagatcctcaccagggacctggacttagaccctgggtgagatccagcgtccag
agagctcagtgggtgaagagcatcaccctctgccagaaagagcaccttagtgtcagactg
ctgtccgaggacctccctgtggacttcctgagctcagtcacttgtcaggtgtgtgaccac
ctgctgtctgagcccgtccagtccccctgcagacacctcttctgccgcagctgcatcgct
aaatacatctgctctctgggtccccactgcccggcttgcaccctgccctgccgccctgcc
gaccttactgccccagctaagggcttcctgggggtcctgcactccctgccgctgctctgc
cccagagagagttgtggggagcgggtacggctggactccttcagagcccactgcttggga
caccagctagaggaagataatggggaacagaggtcaccagagaagagcctggacaacttc
ctgcctgtcaacaaaggggggaggccccgacagcatctcttgtcactgacgaggcgtgcc
cagaagcaccggctgagggacctgaagacccaggtgaaggtgtttgcagagaaggaagaa
ggtggagacaccaagtcggtgtgcctgaccctgttcctgctagctctgagggcaggaaac
gaacatcggcaggcagacgaactggaggccatgatgcaaggcaggggctttggcctgcat
cctgctgtgtgtctggccatccgggtcaacacgttcctgagctgcagccagtaccacaag
atgtaccgcaccgtcaaagccaccagtgggcgccagatcttccagcccttgcacacctta
cgtgctgcagagaaggagctcctcccaggctaccaccccttcgagtggcagccggccctc
aagagtgtgtccacatcctgccatgtggggatcattgacgggctatcagggtgggtcgct
tcggtggatgactccccagcagacacagtcacgcgtcggttccgctacgacgtagccctg
gtgtcggccttgaaggacctggaggaagacatcatggaggggctgagagagcgaggcctg
gaggacagcgcttgcacctcgggcttcagcgtcatgatcaaggagtcctgcgatggcatg
ggggacgtcagtgagaagcatggtggagggccggccatcccggaaaaggctgtgcgtttc
tccttcaccatcatgtccatctctattcaagctgagggagaagatgaggcgatcaccatt
ttccgggagcccaagcccaactcagagatgtcctgcaagccgctctgcctgatgtttgtg
gatgagtcggaccacgagacgctcacaggcgtcctggggcctgtggtggccgaaaggaac
gctatgaagcacagccgtctcatcctgtttgtgggcggcctttctcgctccttccgcttc
cacttccggggcacgggctacgacgagaagatggtgcgagagatggagggtttggaggcc
tctggctccacttacatctgcacgctgtgcgactctactcgggcagaggcctcccacaac
atgactctccactctgtcacccgcagccacgatgagaacctggagcgttacgaactttgg
aggaccaacccttattctgaatcagctgaggagctgcgagaccgagtcaaaggcgtctct
gccaagcccttcatggagacccagcccacactggacgccctgcactgtgatatcggcaac
gccaccgagttctacaagattttccaggatgagataggggaggtctatcacaaggccaac
cccagccgggagcagcgtcggagctggcgagcagccctggacaaacagctgaggaagaag
atgaagctgaagcctgtgatgagaatgaatgggaactatgcacggaagctgatgacccgg
gaggcagtggaggcagtgtgtgagctggtgcactcagaggagcgtcaggaagccctgagg
gagctgatggggctctacctccagatgaagcctgtgtggcgctccacctgcccggccaag
gagtgcccagaccagctctgccggtatagctacaactcccagcgcttcgcagagctgctc
tccaccgtcttcaagtacaggtatgacggcaagatcaccaactacctgcacaagaccttg
gcccacgtgccagagatcgtggagagggatggctccatcggggcctgggccagcgagggg
aatgagtctgggaacaagctgttcagacggttcaggaagatgaatgcccgccagtccaag
acctttgagctggaggatgtgctgaagcaccactggctctacacatccaagtacctgcag
aagttcatggaagctcacaagaactctgccaaagccctgcaggccaccattgacactatg
gagagtcaggagacacaggaggatgctgacatgtcactggatgtcccagacttttga
DBGET
integrated database retrieval system
