Coregonus clupeaformis (lake whitefish): 121532319
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Entry
121532319 CDS
T08357
Name
(RefSeq) LOW QUALITY PROTEIN: cleavage stimulation factor subunit 2-like
KO
K14407
cleavage stimulation factor subunit 2
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121532319
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121532319
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
121532319
U7-dependent histone pre-mRNA processing factors
121532319
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
CSTF2_hinge
RRM_1
CSTF_C
RRM_7
Motif
Other DBs
NCBI-GeneID:
121532319
NCBI-ProteinID:
XP_045083090
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Position
2:complement(26536809..26557678)
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AA seq
631 aa
AA seq
DB search
MANLAAAVVAAAGRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGLVVSFRLVYDRET
GKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPIIES
PYGDNIVPDEAPESISRAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAFALL
QAQVVMRIVDPEIALKMLHRQTPVQPLVPNSQAGPVPVANQPIPSASAPVSQSQPMPGMH
MNGAPQMMQPLPMGGGPGPMPGQGPVGPPGGIQSPMGVPQGGPVPIDRGQGNLQHSPVGS
SGQAAIERPQGPGGIPPRGLLGDGPNDPRGGTLLSVTGEVIEPSRGGGGFIGAPPPHQGP
PMHMNQMAGGPPPDMRPPHDMRGPPMGEPRGMMGEPRGPPMGEPRGMMGEPRGPPMGEPR
GMMGEPRGPPMGEPRGMMGEPGDPMGEPRGMMGEPRGPPMGEPRGMMGEPRGPPMGEPRG
MMGEPRGPPMGEPRGMMGEPRGPSMMEQRGPPMMEPRGPPMETRGRDPRAVDPRGPASGQ
RVPNAQGMQGPAPHSMNPNATPPARPGPGVPQSGDSFSPGHSQVTSQDHEKAALIMQVLQ
LTPEQIAMLPPEQRQSILVLKEQILKTTGTP
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatttagcagctgctgttgttgctgcggctggcagagatcccgctgttgaccgt
tcattgcgctctgtctttgtgggaaacattccatatgaggccacagaggagcaactgaaa
gacattttttcagaagtcggtctcgttgtcagctttaggttggtgtatgatagggagacg
ggcaagccgaagggatatggcttctgtgagtatcaggaccaggagacggccctcagtgcc
atgcggaacctgaacggaagagaattcagcggccgagctctccgtgtcgacaatgctgct
agtgagaaaaacaaagaagagctcaagagtttggggacgggagcccccatcattgagtct
ccatacggtgacaacatcgtgccagacgaggctccggagtctatcagcagagctgtggcc
agtctgcccccagaacagatgtttgagctcatgaaacagatgaagctgtgtgtgcaaaac
agtccccaggaggccaggaacatgctgttgcagaacccccagctggcctttgccttgctg
caggcccaggttgtcatgaggattgtagaccctgagattgccctgaaaatgcttcaccgt
caaaccccagtgcagccattggttccaaacagtcaagctggaccagtgccagtggccaac
cagcctattccctcggccagtgctccagtctcccagtcacagcccatgccgggcatgcac
atgaacggagcccctcagatgatgcagccccttccaatgggtgggggacctgggcccatg
ccaggacagggacctgtgggaccaccaggcgggatacagtcaccgatgggagttcctcag
ggaggtcccgttcctatcgataggggacaaggaaacctccagcactctcccgtaggatcg
tctggtcaggctgctatcgagcgacctcaaggaccaggtggtatccctcccagaggcctg
cttggcgacggccccaacgaccccagaggaggaaccctgctctctgtcacaggagaggtc
atcgaacccagtcgaggaggaggagggttcatcggggcccccccaccacaccaggggccc
cccatgcacatgaaccagatggctggcgggcctcctccggacatgaggccgccccacgac
atgagaggaccccccatgggtgaacccagaggcatgatgggagagccccggggacccccc
atgggtgaacccagaggcatgatgggagagccccggggaccccccatgggtgaacccaga
ggcatgatgggagagccccggggaccccccatgggtgaacccagaggcatgatgggagag
cccggggaccccatgggtgaacccagaggcatgatgggagagccccggggaccccccatg
ggtgaacccagaggcatgatgggagagcccagaggaccccccatgggtgaacccagaggc
atgatgggagagccccggggaccccccatgggtgaacccagaggcatgatgggagagccc
cgaggaccctccatgatggaacagcggggaccccccatgatggagcccaggggacccccc
atggagaccagaggtcgggaccccagagcggtggacccccgtggaccagcgtcgggccag
agggttcccaatgcccaaggaatgcagggccccgcccctcactccatgaatcctaacgcc
actccacctgccagaccgggtcctggtgtaccacagtccggagatagcttcagcccaggg
catagccaggtgacctcacaggaccatgagaaggccgccttgatcatgcaggtgctgcag
ctgaccccagaacagatcgccatgctgcccccagagcagaggcagagcatcctcgtcctc
aaagagcagatcctgaagaccaccgggacgccctga
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