Coregonus clupeaformis (lake whitefish): 121532321
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Entry
121532321 CDS
T08357
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121532321
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121532321
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121532321
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
121532321
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
121532321
NCBI-ProteinID:
XP_041694125
LinkDB
All DBs
Position
19:56694515..56728274
Genome browser
AA seq
2423 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLISKPNFISTLCYTIDNPLHYQKSLKPSAHLFTQLSKVLK
LSKVQEVIFGLALLNSCNADLRGFAAQFVKQRLPDLLRSYVDADLGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGASGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGELAKTMMESSLAEFMQEVGYGFCASLDECRNIILQYGVREVTASQVARVLGMMART
HSGLSDGIPLQSISAPGSGIWSDGKDKSDGSQAHTWNVEVLIDVVKEVNPNLNFKEVTYE
LDHPGFMIRDSKGLQMVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLMSPDVFC
FADYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGQYEQVKQLFSFPIKHC
PDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNAAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGELYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGVSGEPFIQACVTFLKRRCPSIMGGLAPEKDQPKSALLPPETMATMLGCLQS
CAGSVSQELSETILTMAANCSNVMNKARQPPPGVMPKGRAPSTSSIDAISPVQVSVSPLQ
MDPLTAMGSLNLGSSATSHTQSMQGFPTPLGSAFSNPQSPAKAFPPLSNPSTPFGGIGSL
SSQLGNPGPLGSGIGSGIGSGLGMSAVSSDPFGTRKMSTPGLNPPTFQQSKMASDLSQVW
PEANQHFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLR
NLFEEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYF
GIAALDRFKNRLKDYPQYCQHLASIGHFLQFPHHLQECVQYIEYGQQSRDPPVKMQGSIT
TPGSLALAQAQAQSQPPKAAQPSTLVTTATTTTVAKTTTITRPTPGSFKKDVPPSINTTN
IDTLLVATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYL
VMKRVSIEPNFHSLYSNFLDTLKNPDFVKMALNETYRNIKVLLTSDKAAANFSDRSLLKN
LGHWLGMITLAKNKPILYTDLEVKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSVIFRP
QNPWTMAIMNVLAELHTEHDLKLNLKFEIEVLCKNLSLDINDLKPGTLLKDKDKLKSLEE
QLSAPKKEAKPPEEMLPVVSTGIQHFQIGMPLVGDFLPFAAAPSTPAATTTCTATGPPTP
QFSYHDINVYALAGLAPHINININIPLLQAHPQLKQCVRQSIERAVQELVHPVVDRSIKI
AMTTCEQIVRKDFALDSEESRMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFAA
ALRAPTPQQREMMEEAAARVAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQ
EGRRYCDPVVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGFL
AQPMKQQAWATDDVAQIYDKCMADLEQHLHAIPPALAMNPQTQALRSLLEAVALARNSRD
GIAALGLLQKAVEGLLDATSGADADLLLRYRECHLLVLKALQDGRAYGPQWCNKQITRCL
IECRDEYKYNVEAVELLIRNHLVNMQQYDLHLAQSMENGLHYMAVAFAMQLVKLLLVDER
SVSHITEADLFHTIETLMRTSAHSRANAPEGLPQLMDVVRSNYEAMIDRAHGGPNFMMHS
GISQASEYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDL
ITRFFRLCTEMCVEISYRAQAEQQHNPAASAAIIRAKCYHNLDAFVRLIALLVKHSGEAT
NTVTKINLLNKVLGIVVGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQ
TLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKY
LAPFLRNVELNKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILS
AFPRNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFLS
ELRSNLQVGGATLGPWKYLQHNDTSLDQVSNEPGNRYNIQLINALVLYVGTQAIAHIHNK
GSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFA
EANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWSHDFVHCAPEIEKLF
QSVAQCCMGQKQAQQVMEGTGAS
NT seq
7272 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctacctggtggacaattta
actaagaaaaactacagagccagccagcaggaaatacaacatattgtgaatcgtcacggc
cctgaggcagacaggcatttattacgctgtcttttctcccatgtggatttcagtggcgat
ggtaaaagcagtggcaaagatttccatcagacacagtttctgatccaggagtgtgtttca
ctgatttcaaagccaaattttatttcaacactctgctacaccatcgacaatcctttgcac
taccagaagagtttgaaaccttcggcccacttgtttactcagttgagtaaagttctcaag
ctaagcaaggttcaagaagttatatttggccttgctttgctgaattcgtgcaacgcagac
cttcgtggttttgccgcgcagttcgtcaaacaaaggctcccggacctcctccgctcgtac
gtggacgcggaccttggaggaaaccaggaaggtggcttccaagacattgccatagaggtc
ctgcacctgctcctctcccatcttttgtttggccagaagggagccagcggggtcggacaa
gagcagattgacgcgttcctcaagacgctgtgcagagatttcccgcaggagcgctgccct
gtggtgctcgcaccactgctgtaccctgaaaaacgggacattctgatggacaggattctg
ccagactcgggagagttagccaagaccatgatggagagttctctcgcagagttcatgcag
gaagttggctatggcttttgtgcaagtctcgatgaatgccgcaacataatcctgcagtat
ggggtgcgagaggttactgccagccaggtggctagggtcctggggatgatggctcgcacc
cactctggcttgtctgatggaatccccctacagtccatctcggctccgggcagtggcatt
tggagcgatggaaaggacaaaagtgatggctctcaggcgcacacctggaatgtagaagtt
ctaattgatgtggtcaaagaagttaaccccaatctgaactttaaagaggtgacctacgag
ctcgatcaccctggcttcatgatccgggacagcaagggactgcagatggtggtatatggg
atccagaggggcctgggcatggaggtgttccctgtcgaccttatctaccggccctggaag
catgctgaaggacagctgtcattcatccagcactccctcatgagccctgatgtgttctgc
ttcgctgactacccctgtcacaccgtagccatcgacatactcaaggccccacctgaggat
gataatcgggagatagccacctggaagagcctggacctggtggagagcctcctgcgcctc
tctgaggtgggccagtacgagcaggtaaagcagctcttcagcttccccatcaagcactgt
cccgacatgctggtgctggcgctgctgcagataagcacctcctggcacaccctgcgccac
gagctcatctccaccctcatgccaatcttcctgggcaaccaccccaacgccgccatcatc
ttgcactacgcctggcacggacaaggccagtccccctctatccgtcagctgatcatgcac
tcgatggcagagtggtacatgagaggggagctgtacgaccaggccaagctgtcccgcatc
ctggatgtggcccaggacttgaagtctctatcaatgctgctaaatggtactccatttgcc
ttcgttattgaccttgctgcacttgcctctcgccgtgaatacctcaaacttgacaaatgg
ctgactgacaaaatccgagagcacggggtgagtggtgagcccttcatccaggcgtgtgtt
acgttcctgaagagacgctgtccctctatcatgggtggtctggccccagagaaggaccag
cccaaaagcgccctccttccaccggaaacgatggctaccatgctgggctgtctgcagtcc
tgtgcagggagcgtctctcaagagctctccgagactatcttgaccatggctgccaactgt
agcaacgtcatgaacaaagcccgccagccgccaccaggggtcatgccaaagggacgtgct
cccagcaccagcagcatagatgcaatttcccctgtgcaggtatcggtgtctcctctccag
atggatcccctgacagccatgggctccctcaacctgggcagctctgccacctctcacaca
cagagcatgcagggctttcccaccccgctgggctctgctttcagcaacccccagtcccca
gctaaggccttccctcctctgtccaaccccagcacaccatttggggggattggaagcctc
tcttcacagctaggtaacccaggtccgctgggatcaggcattggctctggtattggttct
ggtcttggaatgtcagcggtgagcagtgatccgtttgggacgaggaagatgagcacacca
ggcctgaatccgcccacctttcagcagagtaagatggcctctgacctatctcaggtgtgg
cccgaggctaatcagcactttagtaaggagattgacgatgaggctaacagctacttccag
cgcatctacaaccatcccccacaccccaccatgtctgtggatgaggtactggagatgctg
cagaggttcaaggactccaccatcaagcgagagcgtgaggtctttaactgtatgctgagg
aacttgtttgaggagtaccgcttcttcccccagtaccctgacaaggagctgcacatcacc
gcctgcctgttcggggggatcattgagaaaggtcttgtcacctacatggccctcggactg
gccctccgatatgtcctcgaagccttgaggaaaccatttgggtccaaaatgtattacttt
ggaatcgctgctctagatagattcaaaaatagactgaaggactatccccaatattgtcag
cacttggcctcaatcggccactttctgcaattcccccatcatttacaagagtgcgtgcag
tatatcgagtatggccaacagtcacgggaccctccggtgaagatgcagggatccatcacc
accccaggaagcctggcgttggctcaagctcaggcccagtctcagcctcccaaagccgcc
cagcctagcaccctggtcaccacagctaccaccaccaccgtcgccaaaaccactaccatc
acccggcctacccctggcagcttcaagaaggatgtgccgccctccatcaacaccacaaac
atcgacacgcttctagtagcaacagaccaaaccgagaggattgtggaacccccagaaaat
gttcaagagaaaattgctttcatcttcaataacctgtcacaatccaatatgacacagaag
gttgaggagttaaaggagactgtcaaagaggagttcatgccctgggtctcccagtatctg
gtcatgaagagggtcagcatcgagcccaacttccacagcctgtactccaacttcttggac
accctgaagaacccagattttgtcaaaatggccttgaatgaaacttacagaaacatcaag
gttctccttacctctgataaggcagctgcaaacttctctgatcgatccctactgaagaat
ttgggccactggcttggcatgatcactctggctaaaaacaagcccatcctgtacacagat
ttggaggtgaaatccctcttgttggaagcgtatgtcaaggggcagcaggagctactctat
gtggtcccgtttgtggccaaagtcctggaatccagtttacgtagcgtgattttccgaccc
cagaatccctggactatggccatcatgaatgttctggcagagctgcatacggagcatgat
ctgaagctgaacttaaagtttgagattgaggtgctgtgtaagaatttatcactggacatc
aatgacctgaagcctggcaccctgctgaaggacaaagacaagttgaaaagcctggaggaa
cagctctctgcaccaaagaaagaggccaagccccctgaagaaatgctccctgttgttagc
acaggtatccagcactttcaaattgggatgccccttgtcggagactttcttccatttgca
gctgcaccatccactcccgccgcaaccaccacttgcacagctactgggccccctacccca
cagtttagctatcatgacatcaatgtgtacgcccttgcagggctagcccctcacatcaat
atcaacatcaatatccccttgctccaagcccaccctcagctgaagcagtgtgtgagacag
tccattgagcgggccgtgcaggagctcgtccaccccgtggtggaccgttcaatcaagatc
gccatgactacctgcgagcagatcgtcaggaaggactttgccctggattccgaggagtcg
cggatgcgtgtggccgcccatcacatgatgcgtaacttgactgccggcatggccatgatc
acctgccgggagcccctgctcatgagcatcgccaccaacctgaagaacagctttgccgca
gccctcagggcccccaccccccagcagagagagatgatggaggaggctgctgccagagtc
gcccaggacaactgtgagctggcctgctgcttcatccagaagactgccgtggagaaggca
ggcccagagatggacaagagactggccacggagtttgagttgaggaagcacgcccgtcag
gagggccgtcgctactgcgaccctgtggtgctgacctaccaggcagagcgcatgccagag
cagatcagactcaaggttggaggcgtagaccccaaacagctggcggtgtatgaggagttt
gccaggaatgttccaggcttcctacccagcaacgacctgtctcagcccactggattcctt
gcccagcccatgaagcaacaggcatgggccacggacgacgtggctcagatctatgacaag
tgcatggcggacctggagcagcacctccatgccatccccccagcgctggccatgaacccc
cagactcaggccctgcgcagtctgctggaggccgtggccctggccaggaactcccgggac
ggcattgccgctctgggcctgctgcagaaggctgtggagggtctgctggatgccaccagt
ggtgccgatgctgacctgctcctgcggtacagagagtgccacctgctggtgctcaaagcc
ctccaggatggccgggcatatgggccacaatggtgcaacaagcagattaccaggtgtctg
attgagtgccgtgatgagtacaagtacaacgtggaggctgtggagctgctgatcagaaac
cacctggtcaacatgcagcagtacgacctgcacctggcacagtcaatggagaacgggctg
cactacatggcggttgcatttgctatgcagctggtgaagctgctgctggtggatgagcgc
agtgtgagccacatcacagaggccgacctgttccacaccatcgagactctgatgagaacc
agcgcccactccagggccaacgcacccgaggggcttcctcagctgatggatgtggtccgc
tccaactacgaggccatgatcgaccgggcccacggaggacccaactttatgatgcactct
ggcatctcccaagcgtctgagtatgacgatccaccgggcctgagggagaaggcggagtac
ctgctgagggaatgggtcaacctgtaccactctgcagccgctggccgggacagcaccaag
gccttttctgcttttgtgggccagatgcaccagcaaggcattctgaagactgatgacctg
atcacgcgtttcttccggctgtgcacagagatgtgtgtggagatcagctaccgcgcccag
gccgagcagcagcacaaccctgcggccagcgctgccattatcagggccaagtgctaccac
aacctggacgcctttgtgcgcctcatcgctctgctggtcaagcactccggagaggccacc
aacacagtcaccaagatcaacctgctcaataaggttctaggtattgtggttggagtgctg
atccaggaccatgatgtgagacagacagagtttcagcagttgccttaccaccgcatattc
atcatgctgctgcttgagctcaatgcccccgagcatgtgctggagaccatcaacttccag
accctcaccgccttctgcaacactttccacatcctgaggcctaccaaagcccctggcttt
gtctacgcttggctggagttgatctctcaccggatcttcatcgccaggatgctggcacac
accccacagcagaagggttggcccatgtatgcccagctgctcattgatctgttcaagtac
ctagcgccattcctgaggaatgttgagctcaacaaacctatgcaaatcctctacaagggc
accctgcgtgtcctccttgtcctgctgcatgacttcccggagttcctgtgcgactaccac
tacggcttctgcgacgtcatcccgcccaactgcatccagctccgcaacctgatcctgagt
gccttcccacgcaatatgaggcttccagaccccttcactcccaatctgaaggttgacatg
ctcagcgagatcaacattgctccacgcatcctcactaacttcactggagtgatgccctct
cagttcaagaaggatctggactcgtacctgaagacgcgctcccccgtcaccttcctctct
gagctccgcagcaatctgcaggtagggggcgccactctgggtccctggaagtatttgcag
cacaacgacacatctttagaccaggtgtcaaatgagccaggcaatcgttacaacatccag
ctgatcaatgcactggtgctgtacgtggggacccaggccatcgcacacatccacaacaag
ggcagcactccctccatgagcaccatcactcactcagcccacatggacatcttccagaac
ctggctgtggacctggacactgaggggcgctatcttttcctgaatgcgattgctaatcag
ctgcgctacccaaacagccacacccattacttcagctgcaccatgctctacctgtttgct
gaggccaacacagaggcaatccaggagcagatcaccagggttcttctggagaggctgatt
gtgaacaggcctcacccctggggactgctcatcaccttcatcgagctcatcaagaaccct
gcattcaagttctggagccacgactttgtgcactgtgccccggagattgaaaagttgttc
cagtcagtggctcagtgctgcatggggcaaaagcaggctcagcaggtgatggagggcact
ggtgccagttag
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integrated database retrieval system
