Coregonus clupeaformis (lake whitefish): 121532452
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Entry
121532452 CDS
T08357
Name
(RefSeq) nuclear factor NF-kappa-B p105 subunit
KO
K02580
nuclear factor NF-kappa-B p105 subunit
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04010
MAPK signaling pathway
cclu04210
Apoptosis
cclu04218
Cellular senescence
cclu04620
Toll-like receptor signaling pathway
cclu04621
NOD-like receptor signaling pathway
cclu04622
RIG-I-like receptor signaling pathway
cclu04623
Cytosolic DNA-sensing pathway
cclu04625
C-type lectin receptor signaling pathway
cclu04920
Adipocytokine signaling pathway
cclu05132
Salmonella infection
cclu05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
121532452
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
121532452
04218 Cellular senescence
121532452
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
121532452
04621 NOD-like receptor signaling pathway
121532452
04622 RIG-I-like receptor signaling pathway
121532452
04623 Cytosolic DNA-sensing pathway
121532452
04625 C-type lectin receptor signaling pathway
121532452
09152 Endocrine system
04920 Adipocytokine signaling pathway
121532452
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
121532452
09171 Infectious disease: bacterial
05132 Salmonella infection
121532452
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121532452
Transcription factors [BR:
cclu03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
121532452
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Ank_2
Ank
Ank_3
Ank_4
Ank_5
Death
Motif
Other DBs
NCBI-GeneID:
121532452
NCBI-ProteinID:
XP_041694245
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All DBs
Position
2:26801958..26825408
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AA seq
934 aa
AA seq
DB search
MAEEEPYIPHSQYNFDVDPLWDPLNFPPVSHSNSLRTVTADGPYLQIIEQPKQRGFRFRY
GCEGPSHGGLPGASSEKNRKSYPHVKICNYQGMARVVVQLVTNSKDAHLHAHSLVGKQCD
KGICIADLQPKDSSISFPNLGILHVTKKNVSKTLEDRMTEAYRMGYNCGIVIQPEMDAFQ
GEVRIPRELTDHQKNLIHNAASYQAKEMDLSVVRLMFTAFLPDSDGGFSRRLDPVISDPI
FDSKAPNASNLKIVRMDRTAGCVTGGEEIYLLCDKVQKDDIQVRFYEDDETGLTWEAFGD
FSPTDVHRQFAIVFKTPKYRDLNLQKPTSVFVQLKRKSDNETSEPKPFTYHPQIIDKEEV
QRKRQKTLPNFQDYSGQGGAGGLYRGTGGGGSSAGGGPGSGGGGFFQGYSSYNNYGTGYS
AGFSPGMSGGGAVIKHAPQGRAEDSGDDSDMDDDLASGAVVGVRAKSEDASAGETSEERG
GGVELGPGDRTGECVLEARLVDVAERQAEALFQYAVTGDVRYLLAPQRQLMTAQDENGDT
GLHLGVIHSQTDAVRSLAQVLSVLPGEEVLNMRNNLYQTPLHLAVITQQKAVAEALLLAG
ADVTLSDRHGNTALHLAAQQKEGGMVGFLLRHKEVVELVDLPNAAGLCSLHLAVLANSLC
SLRDLLVSGGSVEVQERSCGRTALHLATELDNVSLAGCLLLEGNADVDCCTYNGSSPLHI
ATGRGSVKLTALLMAAGADPHKENFEPLFFREDDCCVDEEEEEQDEGYIPGTTPLNMAAT
PEVLEILNGKEYKPETNASIFVPLQGDMQSLDSDTKRALCQALECPERGWESLAHTLGLG
ILNSAFRLSPSPASTLLDSYEVSGGMVKDLLEGLRTVGNCAALTVLQGALCETEQAPQST
TELLGCLSERVWDLKLEGWEDSGVCDSGVELSTA
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atggcagaagaggagccttacatacctcactcacaatacaactttgacgtagatccgcta
tgggatcctctaaatttccctcccgtgtcacactccaactcactccggacagttacagca
gatggaccctacctccaaatcattgaacagcctaaacagcggggcttcaggtttcgttat
ggctgtgaggggccttctcacggcgggctaccaggggcctctagtgagaagaacagaaag
tcctatccccatgtcaagatctgtaactaccaggggatggcgcgtgtggtggtacagctg
gtaaccaactctaaagatgcccacctccatgcccacagtctggtgggcaagcagtgtgac
aagggcatctgcatcgcagacctacagcccaaagactccagcatcagtttccccaacttg
ggcatcctccacgtgaccaagaagaacgtgagtaagaccctggaggaccgtatgactgag
gcctacaggatgggctacaactgtggtattgtcatccaacccgagatggatgccttccag
ggagaggtccgcatcccccgagagctcactgatcaccagaaaaacctgatccacaatgca
gcgtcctaccaggctaaagagatggacctgagcgtggtgcgcctcatgttcacagccttc
ctcccagacagtgacggtggcttctcccgtagactggaccccgtcatttcagaccccatc
ttcgacagcaaagctcctaatgcgtctaacctgaagatagtgcggatggaccgaacagct
ggctgtgtgacgggtggagaggagatctacctgctctgtgacaaggttcagaaagatgac
attcaggtgcgcttctatgaggatgacgagacagggctgacatgggaggcctttggggac
ttttcccccactgatgtccaccgacagtttgccattgttttcaagacccccaaatacaga
gacctgaacctccagaagcccacctcagtgtttgtgcagctgaagcgtaaatcggacaac
gagacgagcgagccaaagcccttcacctaccacccgcagatcatagataaggaagaggtg
cagaggaagagacagaagaccctgcctaacttccaggactacagcggccaaggtggagca
gggggcctgtaccggggaacagggggaggaggctcctctgctgggggaggacccggctcc
gggggaggaggtttcttccagggctattccagctacaataactacggcaccggctatagc
gctggcttttcccctggcatgagtggtggcggggcggtcattaaacatgctccacagggc
agagcggaggacagtggtgatgacagcgacatggatgatgacctggcctcaggggcagtg
gtgggcgtccgagccaagtcagaggatgcctctgctggggagacgagtgaggagagaggg
ggcggtgtggaactaggaccaggggacaggactggagagtgtgtgctggaggccaggctg
gtggatgttgctgagaggcaggctgaagccctcttccagtacgccgtcactggagatgtc
cgctacctgctggctccacagcgccagctcatgacggctcaggacgagaacggtgacact
ggtctccatctgggagtgatccacagccagacagacgcagtcaggagtctagcccaggtc
ctctctgtcctgcctggagaggaggtcctcaacatgaggaacaacctctaccagactcct
ttacacctagcggtgataacccagcagaaggcggtggctgaggccctcctattggctggg
gctgatgtcactctgtctgatcgccacggaaacacagctcttcacctggccgcccagcag
aaggagggagggatggtgggatttctactgcgacataaagaggtagtggaactggtggac
ctccccaacgcagcaggactgtgctccctccacctggcagtgctggccaacagcctgtgt
tccctcagggacctcctggtgagcggtggcagtgtggaggtccaggagaggagctgcggc
cgcacagcgctccatctggccactgagctggacaacgtctccctggcaggctgcctgcta
ctggaggggaatgctgatgtggactgctgcacctacaacggttccagccctctccatata
gccacagggcggggctctgtcaagctgaccgctctcctcatggctgcaggtgccgatcct
cacaaagaaaactttgagcccctgttcttcagagaggatgactgctgtgtggatgaggaa
gaggaggagcaggacgaaggctacatcccagggacaactcctctcaacatggctgccact
cctgaggtgttggaaattctgaatggaaaagagtacaagccagagaccaacgcctcaatc
tttgtcccccttcaaggtgacatgcagagcctggactcagacacaaagcgggcactatgc
caggccctggagtgcccggagaggggctgggagagcctggcacacacgctggggctgggc
atcctcaacagcgccttcagactcagcccctcccctgccagcacgctgctggacagctac
gaggtgtctggaggaatggtcaaggaccttttggagggactcaggactgtgggaaactgt
gccgctttgacagtactgcagggggcactgtgtgaaacagaacaggctccccaaagcacc
acagagctcttagggtgtctctcagaacgtgtgtgggatctgaagctggaaggatgggag
gacagtggagtttgtgacagtggggtggagctctccacagcgtga
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