Coregonus clupeaformis (lake whitefish): 121532526 Help Entry 121532526         CDS       T08357                                  Name (RefSeq) pre-mRNA-processing factor 19   KO K10599   pre-mRNA-processing factor 19 [EC:2.3.2.27] Organism cclu  Coregonus clupeaformis (lake whitefish) Pathway cclu03040   Spliceosome cclu04120   Ubiquitin mediated proteolysis Brite KEGG Orthology (KO) [BR:cclu00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     121532526   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     121532526  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03041 Spliceosome [BR:cclu03041]     121532526    04121 Ubiquitin system [BR:cclu04121]     121532526    03400 DNA repair and recombination proteins [BR:cclu03400]     121532526 Enzymes [BR:cclu01000]  2. Transferases   2.3  Acyltransferases    2.3.2  Aminoacyltransferases     2.3.2.27  RING-type E3 ubiquitin transferase      121532526 Spliceosome [BR:cclu03041]  Complex B   Other components    Prp19 complex     121532526  Complex C    Prp19-CDC5 complex     121532526 Ubiquitin system [BR:cclu04121]  Ubiquitin ligases (E3)   U-box type E3    121532526 DNA repair and recombination proteins [BR:cclu03400]  Eukaryotic type   Other factors with a suspected DNA repair function    PSO4 complex     121532526 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  WD40_Prp19 WD40 Beta-prop_EML_2 WD40_WDHD1_1st WD40_CDC20-Fz Prp19 WDR55 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd EIF3I Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML Beta-prop_WDR75_1st ANAPC4_WD40 Beta-prop_SCAP WD40_MABP1-WDR62_1st Beta-prop_IFT140_1st NBCH_WD40 Beta-prop_TEP1_C Beta-prop_EIPR1 Beta-prop_Vps41 Beta-prop_WDR19_1st Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_HPS5 WDR90_beta-prop_4th PEP5_VPS11_N Beta-prop_SPT8 Beta-prop_DCAF4 WD40_RFWD3 U-box Beta-prop_WDR35_TULP_N Beta-prop_Nup120_160 PROPPIN Beta-prop_DCAF12 eIF2A RMC1_N B-prop_COPA_B_2nd Beta-prop_LRRK2 Cytochrom_D1 Nucleoporin_N Mala_s_1-like zf-Nse ATG16 Motif Other DBs NCBI-GeneID:  121532526 NCBI-ProteinID:  XP_041694268 LinkDB All DBs Position 2:26867233..26873293 Genome browser AA seq 505 aa AA seqDB search MSLVCAISNEVPEHPCVSPVSNQVFERRLIEKFIAENGVDPMNGQPLSEEQLIDIKVSHA IRPKAASATSIPAILKSLQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARL TKEVTAAREALATLKPQAGLVAPQAMPASQPAAGGAGGEPMEVSEQVGMTPEIIQKLQDK ATVLTTERKKRGKTVPEELVRAEDLSKYRQVASHAGLHSASVPGILCMDLCPSDTNKVLT GGADKNVVVFDKKEEQIITTLKGHTKKVTSVIYHPSQSVVFSASPDSTIRVWSVTGGNCV QVVRAHEASVTGLSLHATGDYLLSSSEDQYWAFSDIQTGRVLTKVTDEAAGVALTCAQFH PDGLIFGTGTADSQIKIWDLKERTNVANFPGHSGPVTSIAFSENGYYLATGAQDSSVKLW DLRKLKNFKTIALDNNYEVKSLVFDQSGTYLAVGGSDIRVYICKQWSEVLNFSDHSGLVT GVAFGDNAQFLSSAGMDRSLKFYSL NT seq 1518 nt NT seq  +upstreamnt  +downstreamnt atgtctttggtttgcgcaatttccaatgaggtcccggagcacccatgcgtgtccccggtg tccaaccaggtgttcgagcgccgactgatcgagaagttcatcgcggagaatggagtagac ccaatgaatggccaaccactgtccgaggagcaacttatcgatattaaagtgtctcatgct atccgaccaaaggctgcctccgctaccagtatccctgccatactcaagtctctgcaagat gagtgggatgcggtgatgctccacagtttcactctgaggcagcagctgcagacgactcgc caggagctctctcacgccctctaccagcatgacgcagcctgcagagtcatcgcccgtctc accaaggaggtcactgcagccagagaggcactggccacactcaagccccaagccggattg gtcgcccctcaggctatgcccgcctctcagccagccgctgggggtgcaggtggggagccc atggaggttagtgagcaggtgggaatgactccagagatcatccagaagctccaagataag gccaccgtccttactacagagagaaagaagagaggtaagaccgtgccagaggagctggtc agggctgaggatctcagcaagtaccgccaagtggcttcccacgctggtcttcatagcgcc agtgtcccaggaatcctgtgtatggacctctgtccttcagacaccaacaaagtactcact ggtggggctgataagaacgtggtggtgtttgataagaaggaggaacagatcatcaccacc cttaagggtcacaccaagaaggtcacctctgtcatctaccacccctcccagtcggtggtg ttctctgcctctccagacagcaccatccgggtgtggtccgttactgggggcaactgtgtc caggtggtgcgagctcacgaggcgagcgtgactgggctgtcacttcacgccaccggagac tacctgcttagctcctctgaggaccagtactgggccttctccgacatccaaactggccga gtccttaccaaagtcactgatgaggctgctggtgttgctcttacttgtgctcagttccac cctgacggtctgatctttgggacgggaactgccgactcccagatcaagatctgggatctg aaggagcgcaccaacgtggccaacttccctggccactccggccccgtcacctccattgcc ttctctgagaacggatactacctggccacaggtgcccaggacagctctgtgaagctgtgg gatctgaggaaactgaagaacttcaagaccatcgccctggacaacaactacgaggttaag tctctggtgtttgatcagagtggtacatacttggctgtgggtggatctgacatcagggtg tacatctgcaagcagtggtcggaggtcctaaacttcagcgaccactctggcctggtgacc ggtgtggcgtttggagacaatgctcagttcctttcctccgccggaatggacagaagcctc aagttctacagcctgtaa

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