Coregonus clupeaformis (lake whitefish): 121532777
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Entry
121532777 CDS
T08357
Symbol
her6
Name
(RefSeq) hairy-related 6
KO
K06054
hairy and enhancer of split 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03460
Fanconi anemia pathway
cclu04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
121532777 (her6)
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
121532777 (her6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121532777 (her6)
03400 DNA repair and recombination proteins [BR:
cclu03400
]
121532777 (her6)
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Hairy, Hairy/E(SPL)
121532777 (her6)
DNA repair and recombination proteins [BR:
cclu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
FA (Fanconi anemia) pathway
FA core complex binding factors
121532777 (her6)
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GFIT
Motif
Pfam:
Hairy_orange
HLH
Spectrin_1st_PEPL
bHLH_NCOA
Motif
Other DBs
NCBI-GeneID:
121532777
NCBI-ProteinID:
XP_041694507
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All DBs
Position
20:13206379..13208362
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AA seq
267 aa
AA seq
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MPADMMEKNSSSPVAATPASMNTTPDKPKTASEHRKSSKPIMEKRRRARINESLGQLKTL
ILDALKKDSSRHSKLEKADILEMTVKHLRNLQRAQMTAALNTDPTVLGKYRAGFSECTNE
VTRFLSTCEGVNTEVRTRLLGHLASCMTQINAMNYPTQHQISAGPPHPSFGQSMVQMPNS
SPQGNVMPLPCKGGSPQSMSPEATKVYGGFQLVPATDGQFAFLIPNAAFAPNGPVIPVYA
NQVNTPVPAAVSPGAPTGNSDSVWRPW
NT seq
804 nt
NT seq
+upstream
nt +downstream
nt
atgcctgccgatatgatggaaaaaaactcatcctctccggttgctgctaccccagccagc
atgaacacgacacctgataaacccaagacggcttccgagcacaggaagtcatccaaacct
atcatggagaagaggagaagagccagaatcaacgaaagcttgggacagttgaaaacactt
atcctggatgcgctcaaaaaagatagctctagacactcaaaacttgaaaaggcagacatc
ctggagatgacggtgaaacatctccggaacctccagagagctcaaatgactgctgctttg
aacactgatcccaccgtgctggggaaatacagagctggattcagcgagtgcacgaatgaa
gtcacccggttcctgtccacctgcgagggggttaacaccgaggtcaggacgcggcttctc
ggtcacttggccagctgcatgacgcagatcaacgctatgaactaccccacgcagcaccag
atctcagccgggcctccccacccctccttcggccagtccatggtacagatgcccaactct
tctccccaaggcaacgtgatgcccctgccttgtaaaggtggctctccccagagcatgtca
ccagaagccactaaagtatacggcggtttccagctcgtacctgccacagacggacaattc
gccttcctcatccccaacgcagcttttgctcccaacggtccggttatccccgtgtacgcg
aaccaggtcaacacgcctgttccagcggcggtgtcccctggtgcaccaacaggcaactcg
gactcagtgtggcgaccctggtag
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