Coregonus clupeaformis (lake whitefish): 121532845
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Entry
121532845 CDS
T08357
Symbol
prpf38a
Name
(RefSeq) pre-mRNA-splicing factor 38A
KO
K12849
pre-mRNA-splicing factor 38A
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121532845 (prpf38a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cclu03041
]
121532845 (prpf38a)
Spliceosome [BR:
cclu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
121532845 (prpf38a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PRP38
PRP38_assoc
GIP4
Allexi_40kDa
Motif
Other DBs
NCBI-GeneID:
121532845
NCBI-ProteinID:
XP_041694572
LinkDB
All DBs
Position
20
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AA seq
309 aa
AA seq
DB search
MANRTVKDANSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMALKFVGGV
YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRLLGAMYMRLTGTSVDCYKYL
EPLYNDYRKIKSQNRNGEFELQHVDEFIDELLHAERMCDIILPRLQKRQVLEEAELLDTR
ISALEEDLDEVETSDEEEEEEEKPERVQTPEPHRRSYRDNDRPRRSPSPRYKRSHSPRRR
SRSPKRRSPSPRRERHRSKSPRRHRSRSRERRHRSKSPGHHRSHRHRSHSKSPERSSKKS
HKKSRRGNE
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
atggcaaataggactgttaaagatgcaaacagtatacatggaacaaatccacaatacttg
gtagagaaaattattcgtactcgaatctatgaatcaaaatattggaaagaagaatgcttt
ggactgactgccgaacttgtcgttgacaaagccatggcgctgaagtttgtcggaggagtc
tatggaggaaatatcaaacctacaccgttcctgtgtctcactctgaagatgctgcagatc
cagccagaaaaagacatcatcgtagaattcatcaagaacgaggatttcaagtatgtccgc
ttgcttggggcaatgtacatgaggttgactgggacatcagtggattgctacaaatacctg
gaaccactgtacaacgactatcgaaaaatcaagagtcagaaccgaaatggagagtttgag
ctgcaacatgtagatgagtttattgatgaactgctacacgctgagagaatgtgtgacatc
atccttcccaggcttcagaaaagacaggtccttgaggaggcggagttgttagacacacgc
atcagcgccctagaagaggacctggatgaagtggagaccagtgacgaggaagaggaggaa
gaggagaagccagagagagttcagaccccggagccccacagacggagttaccgggacaac
gaccgccctcgccgctcgccctctccacgctacaaacgcagccattcacccagacggagg
agcagatcacccaagagacgaagcccatcccccagacgagagcgccaccgcagcaaaagc
ccccgtcgccaccgcagccgttcccgagagagacgtcatcgctcaaagtccccaggccat
cacagaagccacaggcatcgcagtcactccaaatccccagagaggagttcaaaaaagagc
cacaagaagagtcgccgaggaaacgagtga
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