Coregonus clupeaformis (lake whitefish): 121532940
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Entry
121532940 CDS
T08357
Name
(RefSeq) receptor-type tyrosine-protein phosphatase S isoform X1
KO
K06778
receptor-type tyrosine-protein phosphatase S [EC:
3.1.3.48
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
121532940
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cclu01009
]
121532940
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cclu04515
]
121532940
Enzymes [BR:
cclu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.48 protein-tyrosine-phosphatase
121532940
Protein phosphatases and associated proteins [BR:
cclu01009
]
Protein tyrosine phosphatases (PTPs)
Class I PTPs (Classical)
Receptor PTPs
121532940
Cell adhesion molecules [BR:
cclu04515
]
Immunoglobulin superfamily
Type II RPTP family
121532940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Y_phosphatase
fn3
Ig_3
I-set
Pur_ac_phosph_N
Ig_DSCAM-DSCAML_C
Ig_2
ig
Tc-R-P
PTP-SAK
DSPc
V-set
PTPlike_phytase
Y_phosphatase3
Fn3_PTPRU
Motif
Other DBs
NCBI-GeneID:
121532940
NCBI-ProteinID:
XP_045082460
LinkDB
All DBs
Position
17:72870118..73095613
Genome browser
AA seq
1956 aa
AA seq
DB search
MAAGGPPCLSLPVLLPLCALLLCLLLTGSHALSPPRFTKVPVDQIGVSGGVVSFVCQATG
DPKPRVSWNKKGKKVNSQRIETIEFDEGAGAVLRIQPLRAPRDENIYECVAENSEGEVNV
NAKLSIIREDLLPTGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPIDPN
ASNGRIKQLRSEAFEGTPIRGALQIENSEETDQGKYECVASNVEGVRYSSPANLYVRELR
EVRRVPPRFSIPPTSHEIMPGGSVNITCVAVGSPMPYVKWMLNSEDLTPEDEMPVGRNVL
ELNSVRESANYTCVAMSSLGIIEAVAQITVKSLPKPPGIPMVTETTATSVTITWDSGNPD
PVSYYIIQYRAKSPDSKFETMDGITTTRYSIGGLYPNTEYEIRVSAFNTIGQGPPSEPVE
TRTGEQAPASPPRNIQARIISQNTMMVRWDEPEEPNGQIKGYRVYYTMDPSQLMSLWQIH
NVQDSIITTIQSLVASETYTIRVLAFTSVGDGPFSDPIHVKVLQGVPGQPTKFQVGAVSD
TSIELTWEPAFEKEGIINFELRYKEGSFGSQVTKTFGPTASYVVEGLRANTEYYFSLAAI
SNKGIGAFTNEISQKTLQAKPSAPPQDIKCSSSSSTTLLVSWRPPPVESQNGALAGYLVR
YQVVGASIEGGGGGGAGEPMEEPAVPPSDGQVLLQKLEKWTQYRVTLAAFTEIGPGPESE
PLLCRTDEDVPGAPPRRVEVEVLNSTALKVMWRSLLPGRQHGQIRGYQVHYVRVENGESR
GLPLIKDVMLADAQWETDDTAEYEMVIGGLQPDTTYSITVAAYTTKGDGARSKPKLVVTK
GAVPGPPYLSVAHDSETSAVVRWDAPDVMIPGMELQGYRLQFGRKDVSPLATLEFTPQER
QYTVASVHRGATYLFKVQAKSRGGFGEEATAELQVPEHIPQGYPQISESSNVTCCSVELA
WSPPVLAERNGDITEYTLAYQETGVGGAPRELSLPAIQSSYVLNSLKPNSAYDVKIRAHT
SVGPGPYSPPIQYRTVAFQTDVPKNFTVKWVTKTTVLLTWKFAERRFPFRCTIEYNRQKM
DVDARLTKALVTSLRPNTTYEFRVTCQENTEGGPRHRVVARTAPPILVKKPKLDLYSEPD
NILTMGFAPVESKDIKNFYVVVVPLKKGSGTVRHLKNPDEMDLEELLRDITPKHRTRRQL
SQADGKKPYITACFKQLPTTFTLGTEHRHSSCENKPLEPGQEYVFFLLAELNTTAGKMFA
ASPYTDSVVTPEMEVDPLPMETGGDGLIWVVGPVLAVVFIICIVIAILLYKNSKPDSRKR
KESEPRTKCLLNNAEITPHHPTDPVEMRRINFQTPDSGLSSPLSEADFDYESMMNHPPIP
IAELAEHTEHLKANDNLKLSQEYESIDPGQQFTWEHSNLEVNKPKNRYANVIAYDHSRVI
LAPIEGIIGSDYINANYIDGYRKQNAYIATQGPLPETFGDFWRMVWEQRAATVVMMTRLE
EKSRIKCDQYWPSRGTETYGMTQVTLLDTIELATFCVRTFSLHKVRNGSSEKREVRQFQF
TAWPDHGVPEYPTPFLAFLRRVKTCNPPDAGPIIAHCSAGVGRTGCFIVIDAMLERIKHE
KTVDIYGHVTLMRSQRNYMVQTEDQYSFIHDALLEAVACGNTEVAARSLYSYIQKLAQVE
TGEHVTGMELEFKRLANSKAHTSRFISANLPCNKFKNRLVNIMPYETTRVCLQPIRGLEG
SDYINASFIDGYRQQKAYIATQGPLAETTEDFWRMLWENNSTIVVMLTKLREMGREKCHQ
YWPAERSARYQYFVVDPMAEYNMPQYILREFKVTDARDGQSRTVRQFQFTDWPEQGVPKS
GEGFIDFIGQVHKTKEQFGQDGPISVHCSAGVGRTGVFITLSIVLERMRYEGVVDIFQTV
KMLRTQRPAMVQTEDEYQFSYQAGLEYLGSFDHYAT
NT seq
5871 nt
NT seq
+upstream
nt +downstream
nt
atggccgccggcggtccaccctgcctctctctgccggtcctgctgcccctctgcgctctg
ttgctctgtttgctgctcactggctcacatgccctatcgccaccaaggttcactaaagtt
cccgtcgaccagatcggtgtatccggtggcgtggtctcgttcgtgtgccaggcgacggga
gaccccaagcctcgggtgagctggaacaagaaggggaagaaggtcaactcccagcgcatt
gagactatagagttcgatgagggcgccggagctgtgcttcggatccagcctctacgagcg
ccgcgggatgagaatatctacgagtgcgtggcagaaaacagcgagggcgaggtcaacgtc
aatgccaagctgtccatcatcagagaggacttgctcccaacaggattccccaacatagac
atgggtccccagctgaaagtggtggagcgcacccggacagccacaatgctttgtgctgcc
agcggcaaccctgacccagaaatcacctggttcaaggacttcctgcccatagaccccaac
gcaagtaatgggcgaatcaaacagctgcgctcagaagcctttgagggtacccccatccga
ggtgccctgcagattgagaacagcgaggagacggaccaggggaagtacgagtgcgtggcg
tctaacgtggaaggcgtgcgctactcatcccctgctaacctatatgtgcgagagcttcga
gaagtccggcgcgtgccccctcgcttttccatcccgccgaccagtcacgagatcatgcca
ggtggcagtgtgaacatcacctgcgtggcggtagggtcgcccatgccctacgtcaaatgg
atgctcaactcggaggacctgacaccggaggacgagatgccggtgggccggaacgttcta
gagctcaacagcgtgcgagagtctgccaactacacatgtgtggccatgagcagtctgggc
atcatcgaggcggtcgcgcagatcacagtcaagtccctgcccaagcccccaggcatcccc
atggtgactgagaccacggccaccagcgtcaccatcacctgggactcaggcaacccggac
cccgtgtcttattacatcatccagtaccgcgccaagtctcccgacagcaagtttgagacc
atggacggcatcaccaccacgagatacagcatcgggggcctctaccccaacacagagtat
gagatccgcgtttcggccttcaacacgatcggccagggtccccccagtgagccggtggag
acccggaccggggaacaagccccggctagtcctccccgcaacatccaggcccggatcatc
tcccagaacaccatgatggtccgctgggacgagcctgaggagcccaacgggcagatcaaa
gggtaccgggtgtactacaccatggacccgtcccagctcatgagcctatggcagatccat
aatgtccaggatagcatcattaccactatccagagcctggtggcgtctgagacctacacc
atccgtgtcctggcctttacctcggtgggcgatgggcccttctccgaccccatccatgtc
aaagtgctgcaaggagtccccggacagccaacaaagttccaggttggcgctgtgtccgac
acaagcatcgagttgacctgggaacctgcctttgagaaggagggaatcatcaactttgag
ctccggtacaaagagggcagttttggcagccaggtgaccaaaactttcggccccactgcc
tcatacgtcgttgagggtctgcgagcaaacacagagtactacttctctctggccgccatt
tccaacaaaggcatcggagccttcaccaatgaaatatcccagaaaaccttgcaagccaag
ccctcagccccccctcaagacattaaatgcagcagctccagctccaccaccctgctggta
agttggcgccccccgcctgtggagagccagaatggcgccctggcggggtacctagtgcgc
taccaggtggtgggagcctccatagagggtggcggcggcggcggtgccggggaacccatg
gaggagccggccgtgccgcccagcgacgggcaggtgctgctccagaagctggagaaatgg
acccagtaccgtgtcaccttggccgccttcaccgaaatcgggccgggcccagagagcgag
cccctgctctgccgcactgacgaggatgttccaggggctcctcctcggcgggtcgaggtg
gaggtgctcaactccacggcgctcaaggtcatgtggcgctccctgttgccggggcgacag
cacggccagatccgtggttaccaggtgcactatgtgcgcgtggagaacggggagtcgcgc
ggtctgcccctcatcaaggatgtcatgctagctgacgcccagtgggaaacggacgataca
gccgaatacgaaatggtcatcggagggctccagccggacaccacctactccatcacagta
gctgcgtacaccactaagggagatggagcacgcagcaaacccaaactggtggttaccaaa
ggagcagtgcctgggccgccctatctgtcagtggctcacgattcggagacgtcggccgtg
gtgcgctgggacgcacctgatgttatgatacctggaatggagctgcagggttaccggctt
cagtttggccgtaaggacgtgtcccccctggctactctggagttcaccccccaggagagg
cagtacacagtggccagcgtccaccgcggtgccacctaccttttcaaagtccaagctaag
agccgagggggcttcggggaggaggctacggccgaactgcaggtgcccgaacacataccc
caagggtaccctcaaatcagcgagagctccaacgtgacctgctgctctgtagaattggca
tggtcgcccccagtgctggcagagcgcaacggggacatcacggagtacacgctggcgtac
caggagacgggcgtggggggcgcaccccgggaactcagcctgcccgccatccagtccagc
tacgtgctcaacagcctcaaacccaactcggcgtacgacgtgaaaatacgcgcgcacacg
agtgtaggtccagggccctacagcccgccgatccagtatcggactgtggcgtttcagaca
gatgtcccgaagaacttcacagtgaagtgggtcaccaagacaacggtgttgctaacgtgg
aagtttgccgagaggcggttcccattccggtgcacgattgagtacaaccgtcagaagatg
gacgtggacgcccggctgaccaaggcgctagtcaccagcctgcggcccaacaccacctat
gagttccgggtcacgtgtcaggagaacacagagggtggacctcgccaccgcgtggtcgct
aggaccgcaccgcccatcctggtcaaaaagcccaagctggacctctactcggagccggac
aacattctgaccatgggcttcgcccctgtggaaagcaaggacatcaagaatttctatgtg
gtggtggtaccgctaaagaagggctcagggacagtccgacatctcaagaacccagacgag
atggacttggaagagctgctgagggacatcaccccgaaacatcgcaccaggcgccagctg
agccaggcggatggcaagaagccctacatcacggcctgcttcaagcagctccccaccacc
ttcaccctgggcacagagcaccgccacagcagctgtgagaacaaacctctggagcccggg
caggagtacgtcttcttcctgctggccgagctcaacaccaccgccgggaaaatgtttgcg
gccagtccatacacggactcagtggtgaccccagagatggaggtggatcctctgcccatg
gagacgggtggggatggcctcatctgggtggtggggcccgtgctggctgtggtcttcatc
atctgcatcgtcatcgccatcctcctctacaagaacagcaaacctgacagccgcaaacga
aaggagtcagagcccagaacaaaatgtctgctgaacaacgcagagatcacaccccaccat
cccacagaccccgtggaaatgagacgcatcaacttccagaccccagattctggtctgagc
agtcctctaagtgaagccgattttgactatgaaagtatgatgaatcatccacccatccct
atcgcggagctggctgaacacacagagcatctcaaagccaacgacaacctgaagctctcc
caggagtatgagtccatcgatccgggccagcagttcacatgggaacactccaacctggag
gtgaacaagcccaaaaaccgctatgccaatgtcatcgcctatgaccactcccgcgtcatc
cttgcacccatcgaaggtatcataggcagcgactatatcaacgccaactacatagacggt
tacaggaagcagaatgcctacatcgcaacgcagggtcctttgcccgagacgtttggagat
ttctggaggatggtgtgggaacagagggcagccactgtggtcatgatgaccagactggaa
gagaaatcacggatcaagtgtgaccagtactggcccagtcgaggaacagagacctatggg
atgacccaggtgactctactggacaccatagagctggccaccttctgcgtccgcaccttc
tccctgcacaaggtacgaaatggttccagtgagaagcgggaggtacgtcagttccagttc
acggcgtggcctgaccacggggtccccgagtaccccacccccttcctggccttcctacgc
agagtcaagacctgtaacccccctgacgcaggccccatcatcgcccactgcagtgcgggt
gttgggcggacgggctgcttcattgtgatcgacgccatgctggagcgcatcaagcatgag
aagacggtggacatctacggccacgtgacgctaatgcgctcgcagcgaaactacatggtg
cagacggaggaccagtatagcttcatccacgacgcgctgctggaggcagtggcgtgcggc
aacacggaggtggcggccaggagcctgtactcgtacatccagaagctggcccaggtggag
acgggcgagcacgtcaccggcatggagctggagtttaagcgcctggccaattccaaggcc
cacacgtccaggttcatcagtgccaacctgccctgcaacaagttcaagaaccgtctggtg
aacatcatgccctacgagaccacccgcgtctgcctgcagcctatcaggggcctcgagggc
tccgactacatcaacgccagcttcatcgatggatacaggcaacagaaggcctacatcgcc
acgcagggcccattggcagagaccacagaagacttctggaggatgctgtgggagaacaac
tctaccatcgtagtcatgctcaccaaactcagagagatgggcagggaaaaatgtcatcag
tactggcccgctgagcgttcggccaggtaccagtactttgtggtggaccccatggctgag
tacaacatgccccagtacatcctccgagagttcaaagtcaccgacgccagggatgggcag
tccaggacagtgcggcagttccagttcactgattggccggagcagggggtgcccaagtca
ggggagggcttcatagacttcataggccaggtgcacaaaactaaggagcagttcggccag
gacggacccatctctgtccactgcagtgcgggggttggccggaccggtgtcttcattacg
ctcagcatcgtgctagagaggatgcgctacgagggcgtggtggacatcttccaaacggtc
aagatgctgcggacacagaggccggccatggtgcagacagaggatgaatatcagttttcc
taccaggcgggtctggagtacctaggaagctttgatcactatgcaacgtaa
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integrated database retrieval system
