Coregonus clupeaformis (lake whitefish): 121532965
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Entry
121532965 CDS
T08357
Name
(RefSeq) LOW QUALITY PROTEIN: desmoglein-2
KO
K07597
desmoglein 2
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
121532965
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cclu04515
]
121532965
Cell adhesion molecules [BR:
cclu04515
]
Cadherins
Major cadherins
121532965
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Cadherin
CADH_Y-type_LIR
Fibulin_C
Motif
Other DBs
NCBI-GeneID:
121532965
NCBI-ProteinID:
XP_045061398
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Position
20:complement(32980201..32997390)
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AA seq
1225 aa
AA seq
DB search
MNRVSLPAAALLLLAFTQVLVSVAVVEARRSDGLRRHKREWIIPPQKLEENVDYTKKEFI
AKIRSDSDDGTGNVQYSLNGVGASKYPLHLFTVNPDTGFVRISGILNREIIAMYNLTGTA
KFTDGSEAEKNIDLRIQVVDQNDNPPVFGDIKPGEVFELSPTDTFVMKVAATDADEPGNE
NSQIAYTLINQKPPGDSMFYITREGDLRVKRPTLDREVQDWYTLTVKGTDLNGRPEGNTG
TGTFRVNIKDVNDNPPTLEKDEYEGSIEENTENVEVMRFKVEDRDLENTPNWVSQFEIVK
GNEAGYFSIETDPKTNEGVLMLRKGVDYEDVKNLELGIAVANQAPPYNGGGGGGGGGGGW
AAGGGGGGGGGGGGGGGGGGGGAGAGAGGGGGGLWSGGGGSTWKTYPVKIAVKNQPEGPR
FDPKVKAIPISEGGDFKINTVIGSYPAIDGDTRMPAQNVRYAKGSDPDNWLTIDELTGDI
KLNKMPDRESKFLVNGTYYAKILCMTQDMPSKTATGTVAIQVEDFNDHCPTLTSNVQTMC
MTANAVTVTAVDKDAFPNGAPFTFTIIPEGTEGVWVVEHLNDTSTILRSQDLWPGSYAVA
MEIRDQQGHACPDLQKLKVDVCTCTDIGKACATRGDKGSTGAVLGPAALGLLFLGLLMLL
LIPLLLLFCKCGGAGGLPGGFTEMPFDAKAQLISYHTEGQGENTEVPLLNAPVQVDTGRV
KMATAGTIAATAGGAGLMMVGGQFQNSSSTMGGGFYHSDGRMELGYMNGGEMIGQEQGGA
FYSEYESREGGGAYEGIALPDHYLEEYYSQKAHCAAENHVQKDSMLVYDYEGQGSPVGSV
GCCSLLESDNDLQFLNDLGPKFKTLAEVCRGERFQTEVSAPPPPRPVISMPTAASSVTTN
VASRVVSAAPVPAPAPPPAPAQVTHIERAVVRESDRSDRSATLRQDIVGGSQGQTFLLQQ
QPMYYTTMQPMMQPKMQQMHYVVEQQVPNMQGMIVVNGPPSGSAQGLVLQAQQVVTGTQA
QGTLGRGEGGMVVLERSGAGGHGGLEGGLIHIGNMSGSQGMMVVDGPVMQGGQMLQGGQM
LQGGGKFFREGKFFRGGSWYKGVVLQGGQAWLQQGGSLQRGGLSGSQSMLVIEGQGGSSR
GSGLQKVQGGVSGFSQGSKQRSGLSGSHRVLYTTEQSSAAESSAGSQSGIVGLNGSSSSV
SKSPASSTRKVVIEKRVVTNQSSSK
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
atgaatcgggtttctttgcccgccgctgctcttttgctacttgcattcacgcaggtttta
gtgtctgtggctgtggtggaggcacgtcgctctgatgggctaaggagacacaagagggaa
tggatcatcccaccacagaaactagaagaaaatgtagactacaccaagaaagagtttatc
gccaagatccggtcagattcagatgatgggactggtaatgtgcagtactctctaaatggg
gtgggagcttctaaataccccttacacctgttcacagtgaaccctgacaccggctttgta
cgcatcagtggtatcctgaaccgggagattatcgccatgtacaatttgacaggcaccgct
aagttcactgatggcagtgaagcagagaagaacattgatttgaggatccaagttgtggat
caaaatgacaaccctcctgtgttcggtgatattaaaccaggagaggtgttcgagctcagc
ccaacagacactttcgtcatgaaggtggctgcgacagacgctgacgaaccagggaatgag
aactctcagattgcctacaccttaattaatcagaagcctccaggagacagcatgttctac
atcaccagagaaggagacctcagagtaaaacggcccacactggacagagaggtgcaggac
tggtacacgctgacagtgaaaggtacagatctgaacggtagaccagagggcaacaccggc
accggaacctttagagtcaacatcaaggatgtgaacgacaaccctcccactctggagaaa
gatgagtatgagggcagtattgaggagaacacagagaacgtggaggtgatgaggttcaag
gtggaggacagggacttggagaacactcctaactgggtgtctcagtttgaaatcgtcaag
ggcaacgaggctggctacttcagcattgagacagaccccaagacaaacgagggagttctg
atgctcaggaagggtgtagactatgaagacgtcaaaaaccttgagctgggaatagccgta
gctaaccaggctccaccctataatggtggaggaggaggaggagggggtggaggaggatgg
gctgcaggaggaggaggaggaggaggaggaggaggaggaggaggaggaggaggaggagga
ggaggagcaggagcaggagcaggtggaggaggtggaggattgtggtctggtggtggaggt
tctacatggaagacctacccagtgaagatcgctgtgaagaaccagccagaggggccacgc
ttcgaccccaaggtcaaggctatccccatctcagagggaggagacttcaagatcaacacg
gtgatcggctcctaccctgccatcgacggagacacacggatgcctgcacagaacgtcagg
tatgctaagggctctgacccagacaactggctgaccattgatgagttgactggcgatatt
aaactcaataagatgcctgacagagagtccaagttcctggtcaacgggacatactacgcc
aagattctctgcatgacccaagacatgccctctaagacagccacgggtacggtagccatc
caggtggaggactttaacgaccactgccccacgctgaccagtaatgttcagaccatgtgt
atgacagccaatgctgttaccgtgaccgcagtggacaaggatgcgttccccaacggtgcc
cccttcaccttcaccatcatcccagagggaacagagggagtgtgggtggtcgagcatcta
aacgacacctcgaccatcctgaggtcccaagatttgtggccgggctcctacgcagttgcc
atggagatccgcgaccagcaggggcacgcgtgtcccgacctgcagaagctaaaggtagat
gtctgcacgtgtacagacattgggaaggcgtgcgccacacgaggagataagggctctacc
ggggcagtgctagggcctgcagcactcggactgctcttcctgggtctgctgatgctactg
ctgatccctctcctgctgttgttctgtaagtgtgggggtgccggaggtcttccagggggc
ttcactgagatgccctttgacgccaaggcacaactcatctcctaccacactgagggacag
ggggagaacacggaagtgcctctgctgaacgcaccagttcaggtcgacacaggaagggtc
aaaatggccaccgcgggaaccatagcagcaacggccggaggggcggggcttatgatggtt
ggtggtcagttccagaactcctcctccacgatgggggggggattctaccactcagacggc
cgtatggagctgggatatatgaatggaggagagatgattggccaggagcaaggaggggcc
ttttactctgagtatgagagcagagagggaggaggagcctatgaaggcatcgccctgcct
gatcactacctggaggagtactactctcagaaagctcactgtgcagctgagaaccacgtc
cagaaggacagtatgttggtgtatgactatgagggtcagggctctcctgtgggctcggtg
ggatgctgcagcctcctggaatctgacaatgacctccagttcctcaatgacctggggcca
aagttcaagaccctggccgaggtgtgccgcggggagaggttccaaaccgaagtctccgcc
cctccgccacccagacccgtcatctccatgccaacagcagccagcagtgtgacgaccaat
gtggcgtccagagtggtttccgccgccccggtcccagccccagcaccgccccctgccccg
gcccaggtgacacacatagagagggctgtggtgagggagtcagatcgttcagatcggtcg
gctactctgaggcaggacatagtgggaggaagccagggccagaccttcctactgcagcag
cagcctatgtactacaccaccatgcagcctatgatgcagcccaagatgcagcagatgcac
tatgtagtggagcaacaggttcccaacatgcagggcatgatagtggtcaacgggcctccg
tcaggctcggcccagggcctggtgctgcaggcgcagcaggtggtgaccggtacccaggct
cagggcacccttggcaggggagagggaggcatggtggtgttggagaggagtggggctgga
ggccacggagggttggagggaggcctgatccatatagggaacatgtctggttctcagggt
atgatggtggtggatggtccggtgatgcagggggggcagatgctgcaaggtgggcaaatg
ctgcagggggggggcaagtttttcagggagggcaagttcttcagggggggcagttggtac
aagggggtcgtccttcaggggggtcaggcctggctgcaacaggggggctccctgcagcga
gggggcttatcagggtcacagagcatgctggtgattgagggacaggggggtagcagcaga
ggtagtgggttgcagaaagtccagggaggggtgtcagggttctcccaggggtccaagcag
aggagcggcctctctggctcacacagagtcctctacaccacagagcagagctcagccgca
gagtccagcgcaggctcacagagcggcattgtgggattgaatgggtcctccagcagtgtc
agtaaaagccccgcctcctccacccgcaaggtggtgatagagaagagagttgtgaccaat
cagagcagcagtaaataa
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