Coregonus clupeaformis (lake whitefish): 121532974
Help
Entry
121532974 CDS
T08357
Symbol
sh3tc2
Name
(RefSeq) SH3 domain and tetratricopeptide repeat-containing protein 2
KO
K24313
SH3 domain and tetratricopeptide repeat-containing protein
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121532974 (sh3tc2)
Membrane trafficking [BR:
cclu04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
121532974 (sh3tc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_12
TPR_1
TPR_2
SH3_9
TPR_8
SH3_2
TPR_10
TPR_MalT
SH3_1
ANAPC3
TPR_5
TPR_19
Motif
Other DBs
NCBI-GeneID:
121532974
NCBI-ProteinID:
XP_041694687
LinkDB
All DBs
Position
2:complement(13854149..13885829)
Genome browser
AA seq
1458 aa
AA seq
DB search
MPPVTGVEGEEEEGPGVESGDGEAEPDSYWKRKEAFTRGSTVSLAVGERFSSDVVLVFSG
RRCSGVIPDSELQEALRTRLRVVESNSQDVIQLFKDLSARLLSVHAEKDSFVITFKTVEE
IWKFSTYLALGYVARCLENFLCDQSLWLDTELLRDLEITVTVDEEHLATLYLGLLLQEGS
FFAKALVSSGEHSEEEEELCFRRNDLLMVRDTGQDSHWEGTLLSTGQHGLVPVNTMQPLP
YPFYQWFLRKYPDCAGCSPSERGQFDHHIVTGSCEAVVDHNPVGCDELQLSRGDLIEIQG
MLLRGLDLFIGTHCSTGHTGFVHKAHVKPLNAKPLDRQLVFLSEEERASLSQVNPCSTEP
RDNGLLERLFSSDISTVYRLDRLDQSDFTYIRNQPKQEHKPHASSRQSIISEKSDATPPY
HSSPRPSLSHSSPRPSFYASQNALGRGGDGELLSFSLDDTFREMNEFQEDPALFLEEGSW
EGEESEVCDPTLTLLNVHHFQEDFLPLYDLHHSFLWLTFSGQSEEELLGHLEIVREGAKR
TGMAWAHRRACFLLGRLCAKKLKYSQARVYYEEALGVSVVGFSDLPLLIALYTNLTAVYL
KQKMADKLPPILEKASALLLCLPSHTFTSLDEFELLKLVLRRSVVEGDKHLEARACYLTA
SLFLLLRKIDDSLPFVERLQFLTVTLSAEEGRPIAPLDLNWLLSRLYHRKYMPYLALASL
SLDSGQDHSLQDAFHRIELFSRNSVRLNPRWKEGTSLLPAQIVVYLQQALAIAERGEDLK
TQRDLCLGLACVYQQHGALEKALPCAQQAVQTGGGINEEEGFEASVLLGWLLVLTGQPER
AHNTLQPLLQSLQGTDSPTQRGVVHNLLALCLRRQGRVPEAGSHLHHALTISRESGNQRN
QALALANLGCLALGVGAPTLAERFLFRSLWLFLEIWESPVDEEHVQTYLWLGRSYKDRGR
SQDVRLCYEMGLLISLHTRNLHSQMVVAKVLSRHYGDVLLYGQSILYYEHCVSVSRDLKD
KRLEGEYLEILSSLYLSLNTEKSSRKSLDYSKQSLRISIDLGKREEESETWLQVGRIYYL
IHEDELADMYLQAAVKTALRMNDPRFAMSIYEEAGDVFFKGHRNRLASLPFYRDGSLPFA
RSIRDVDSEFRMLSKLTELLMTQEEHEEALQYAILAVQISTKTGVVANERAAYHRLATVY
YSLEQYEMTENYYLKSLSLSPAVLQHPLEARYYTKLYCRLGDMTLHKLKDAYDSVCYFQL
ALAAALEDRANPQALYVVYMKLAEIHANHMPDPLLCQAYRDRAQSLRRELSGLGEMEGRG
GETETEERGGEMEGRGGETEERGGVTCDTDLETRNTDMEETETETGWSESTGTIPKEAID
MDSAWSLRLEPAGLRDMEERDTECQHTGLGDMEKGETEGHQCKGRHAACLASTTSSRFGP
YLAQTRDLCLANTRDRPP
NT seq
4377 nt
NT seq
+upstream
nt +downstream
nt
atgccaccggtcaccggggtggagggggaggaggaggaggggccgggggtggagtctggg
gacggggaggcggagccggacagttactggaagaggaaggaggcattcaccagaggaagc
accgtgtcactagccgtgggagagaggttctcctcagacgtggtgctggtgttcagcggt
cggcggtgctcaggtgtaatacctgactctgaactacaggaggcgctccgtactagactc
agggtcgtcgagagcaacagtcaggacgtcatccagctcttcaaggacctgtctgcccgt
ctgctgtctgtccacgctgagaaggacagctttgtcatcaccttcaagactgtagaggag
atctggaagttctctacctacctggctctaggctatgtggcgcggtgcctggagaatttc
ctgtgtgaccagtcattgtggctggacactgagctgctgagggacctggagatcactgtg
actgtagatgaggaacacctggccacactctacctgggactgctgctgcaggagggttcg
ttctttgccaaggcgctggtgagcagtggcgagcatagtgaggaggaggaggagttgtgt
ttcagacgtaacgacttgctgatggttagagacacggggcaggacagtcactgggagggc
acccttctctccaccgggcaacacggactagtgcctgtcaacaccatgcagccgctgcca
taccccttctaccagtggttcctgaggaagtaccctgactgtgccggatgctccccttca
gagagaggacagtttgaccaccatattgtaactggttcctgtgaggctgtagttgaccat
aacccagtaggttgtgatgagctccagctgagtagaggtgacctgattgagatacagggg
atgctacttcgtggtctggacctgttcataggaacacactgctctacaggacacaccgga
ttcgtacacaaggctcacgtcaagccactcaacgccaaaccactagacagacaactggtg
tttctgagtgaggaggagcgtgcgtctctgtcccaggttaacccctgcagtactgaaccc
agagacaacggcctgctagagagactcttctcctctgacatcagtactgtctacagacta
gatagactggatcagtctgactttacgtacatcagaaaccaaccaaaacaagagcataag
ccccacgccagctcccggcagtccatcatctcagagaagagtgacgctacgcccccctac
cactcctccccccgcccctccctctctcactcctcgccccgcccctccttctacgcttca
cagaatgctttggggcgtggcggtgacggggagttgctgtccttcagtctggacgacacc
ttcagagagatgaacgagttccaggaagacccggcccttttcctggaggaggggagctgg
gagggggaggagtcggaggtctgtgaccccaccctgactctgctcaacgtgcatcacttc
caggaggactttctgcccctgtatgacctccaccactccttcctgtggctgacgttctca
ggacagagtgaggaggagttactgggccacctggagattgtcagggagggggccaagaga
acgggcatggcctgggcacaccgacgggcatgcttcctactggggaggctctgcgccaag
aagctcaagtactcccaggcccgtgtgtattatgaggaagcccttggcgtctctgtcgtc
ggtttctctgacctccctctcctcatcgccctgtacaccaacctcacagctgtctatctc
aaacagaagatggccgacaagctgcccccgatcctggagaaggccagtgctctgctcctc
tgcctccccagccacaccttcacctccctggatgagtttgagctgctgaagctggtgctg
cggaggtctgtggtggagggggacaaacacctggaggcacgggcctgctacctcactgcc
agcctcttcctcctacttagaaagatagatgactccttgcccttcgtggagcgtctccag
ttcctcaccgttacactgtctgctgaggagggacgccccatcgcccccctggacctcaac
tggctcctgtcccggctctaccaccgtaaatacatgccctacctggccctggcatcactc
agcctggactctggacaggaccactcactacaggacgccttccacaggatagaactgttc
agcaggaactcggtgcgtctgaatccgcgatggaaagaggggacgtctcttctcccagcc
cagatcgtggtgtacctgcagcaggctctggccattgcggagcggggtgaggaccttaag
acccagagagacctgtgtctgggcctggcctgtgtgtaccagcaacacggggccctggag
aaggccctgccctgtgcccagcaggctgtacagactgggggtggtatcaacgaggaggag
gggttcgaggcttcagtactgctgggatggttgttagtcctgacgggacagcctgagagg
gcacataacaccctgcagccactactacagtctctacagggaaccgacagcccgacccag
aggggagtggtccacaacctgctggctctgtgtctgcggcggcagggtcgagtccccgag
gccggcagccacctccaccacgccctcaccatctccagggagagtggcaaccagaggaac
caggccctggccctcgccaacctgggctgcctggcactgggcgtgggggcacccacactg
gcagaacgattcctgttcaggtccctgtggttgttcctggagatctgggagagtcccgtt
gacgaggagcacgtccagacctacctatggctggggcggagctacaaggacagggggagg
agccaggacgtcaggctgtgttatgagatgggcctcctcatctccctccacaccaggaac
ctccacagtcagatggtggtggctaaagtcctgagtcgtcactatggtgacgtgctgctg
tatgggcagagtatcctctactatgagcactgtgtgtctgtgtccagggacctgaaggac
aagagactagagggagaatatctagagatcctcagcagcctctacctctccctcaatact
gaaaaatcatcaaggaagtctcttgactacagtaagcagagtctgcgtatctccatcgac
ctggggaagagagaggaagagtcagagacctggcttcaggtgggacgcatctactacctc
atccatgaagacgaactggctgacatgtacctacaggcggcggtgaaaacagccctgagg
atgaatgaccctcgcttcgccatgagtatctacgaggaggcaggagacgtcttcttcaaa
ggccacaggaacaggctggcatcactgcccttctacagggacggcagtctcccgtttgct
cggagcatccgtgacgtcgactcagagttcagaatgctgagtaaactgactgaactactg
atgacccaggaagaacacgaagaggctctacagtacgccattctggctgtacagatcagt
accaagacaggtgtggttgcgaacgagcgggcagcgtaccaccgtctggctacagtgtac
tacagtctggagcagtatgagatgacagagaactactacctcaagtctctgtctctcagc
cctgctgtactgcagcaccccctggaggctagatactacaccaagctgtactgccggctg
ggggacatgacgctgcacaaactgaaggatgcctatgactcggtgtgctacttccagctg
gctctggctgctgccctggaggaccgtgccaacccacaggcactgtatgtggtctacatg
aagctggcagagatccatgccaaccacatgccagacccactgctctgccaggcttacagg
gacagggcacagagcctgaggagggaactctctgggctgggagagatggaggggagggga
ggagagaccgagacggaagaaagaggaggagagatggaggggagaggaggagagacagaa
gagagaggaggagtaacatgtgatacagacctggagacgagaaacacagacatggaggag
accgagacagagactggatggagtgagtctacaggtacaatccccaaagaggctattgac
atggacagtgcatggagcctgaggttggagcctgctgggctacgggacatggaggagaga
gacacagagtgtcaacacacaggactgggagacatggagaagggagagacagagggacac
cagtgtaaaggacgtcacgctgcttgcttagcgagtaccacttcctcccgattcggccca
tacctggcgcaaactcgggacctctgcctcgcaaacacacgtgaccgtccaccctga
DBGET
integrated database retrieval system
