Coregonus clupeaformis (lake whitefish): 121533082
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Entry
121533082 CDS
T08357
Name
(RefSeq) VPS10 domain-containing receptor SorCS1 isoform X1
KO
K27081
VPS10 domain-containing receptor SorCS1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121533082
Membrane trafficking [BR:
cclu04131
]
Protein recycling
Others
Others
121533082
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Gene cluster
GFIT
Motif
Pfam:
Sortilin-Vps10
Sortilin_C
PKD
PKD_4
PSII_BNR
Motif
Other DBs
NCBI-GeneID:
121533082
NCBI-ProteinID:
XP_045079081
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Position
10:complement(62271718..62438177)
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AA seq
1288 aa
AA seq
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MERGVRICPIWHTSVFWFLLLIIISFFLAVKSEITCRSCQRGDKGRIKELLLKTDTREFA
TGYGGEVIGNGAGATAPPSLNSASAETRPLECASGSDECIQGKYIYSRRKRNTDMLLHSK
TALLGGGMHYGSGKQREFTRRGEYKVSNLKMNVHAGKTDVGKAREDLIPGISHKHRVRRN
SPRANIGDDKVKSSGSPQRRETLPLSYSREGITSPAGRSRVTRSELRWSTEDRRAASSRQ
DELKLTSSTFALTGDSAHNQAMVHWSGQNSSVILMLTKLFDFNLNSVTESSLWRSTDYGT
TYQKLNEKVGAKTILSYLYVSPNNKRKIMLLTDPEVESSLLISSDEGATYQKYRLSFYIL
SLLFHPEQEDWILAYSHDQKLYSSVEFGRRWQLVHERVAPNRFYWSKSGLDKEPGLVHLE
TIISEGQALYVTCKLQNCTEANKGKPFPGYIDPNSLVVQDEYVFVQVSTGGRPIYYVSAK
REVFTPMKLPKYTLPKDLHVISTDENRVVAAVQEWNQNDTYNLYVSETGGVFYTLALENV
VSSMGHEGNVMIDLYEVAGIKGMFLANKKMDNVVKTYITYNRGRDWRLLQAPIADLRGNS
IHCELPYCSLHLHLHVSANPYTSGNIESKDSAPGIIVASGSIGAELTTSNVSMFITSDAG
NTWRQIFDEEYSVLYLDQGGALVAIRHTPLPIRHLWMSFDEGRQWNKYSFTMSPLFVDGL
LGEPGEETLIMTIFGHVSHRSEWQLVKIDFRSIFNRRCTEGDYQTWHLHNQGEPCIMGVK
RIYRKLKPVARCVMGKTYSVTMTSAPCDCTEADFECDYGYERRSDGKCTPAFWFLPSSMS
RSCTTGTTFINSTGYRKVVSNNCTAGVIAEYMARRQHCPTQAPKGLHLVTSEGKLTATLG
TNVTFLVFLEEGDGARTSIMVDFGDGHALTYSNVSSIEDGIKHIYKAVGIFRVTATGENS
LGSESVVLYLHVTCQLEYIHLSAPFVAVKSKEVNLTAVLWPSQVGTVTYIWWFGNNTEPI
ITLEGSVACTFSREGVNTVTVQVSAGNGILQDRKTIAVHEYFRSHLLAFSSNLDDHNPDV
AEWRLDVSRVIKNSMVQATGMSPERLLVTVLPGLPTAAEFFLLPDKELTEGKPEKNSAHL
DQLSEILLSALNQNLVQFTLRPGVQVTVYAAHLSAAPLVDTSENHSGSAMLMLLSVVVLG
LAIFVVYKFKRKIPGLNVYAQMQNEKEQEMMPSPVSLTESTLVSPNTPRELVTSPELMDT
ELNTRPIGCIKPHAHVKFSNELPTYINI
NT seq
3867 nt
NT seq
+upstream
nt +downstream
nt
atggagaggggggtcagaatttgccctatctggcacactagcgttttttggtttctgctt
ttgataattatatctttctttctagcggttaaatcagagataacttgcagatcatgtcag
cggggagataaggggcgtattaaggaattactgcttaaaacggacacacgagaattcgca
acagggtacggaggggaagttattggaaatggagccggggcaactgctccaccgagttta
aattctgcaagtgccgaaactcgaccgcttgaatgcgcatctgggtctgatgaatgcatc
caggggaaatacatctactcaaggcgaaaacggaatactgacatgctcctccattccaag
accgcactacttggtggaggaatgcactacggtagtggtaaacagagagaattcacccgg
cgcggtgagtacaaagtttccaacctcaaaatgaacgttcatgcaggcaagacagatgtc
gggaaggctcgcgaagatttaattcccggcatctcacacaagcaccgagttcgtaggaac
agcccgagagctaatattggggatgataaagtgaagtcctccggatcaccccaaagaagg
gagacgctgcctctgagttactcgcgagagggcatcacctcaccggctgggcgcagcaga
gtgacacggtccgaattgcgatggagcaccgaggacaggagagcggccagttcgaggcag
gacgaactcaaactcaccagttcaaccttcgcattgaccggagattccgctcacaaccaa
gccatggtgcactggtctgggcaaaatagcagtgtgattctcatgctgaccaagctgttt
gacttcaacctgaacagtgtcacagagagctcattgtggaggtcaaccgactacggaacc
acttaccagaagctcaatgagaaagtgggggcgaaaacaattctcagctacttgtacgtc
agtcccaacaacaagagaaagatcatgcttctgactgacccggaggtggaaagcagcctg
ctgatcagctccgatgagggagcaacctatcagaagtaccgcctcagcttctacatcctc
agcctgctcttccaccccgagcaggaggactggatccttgcctacagccacgaccagaag
ctgtacagctcggtggagttcggaaggaggtggcaacttgtccatgagagggtggccccc
aatcgattctactggtcgaaatcgggtttagacaaagaaccaggcttagttcacctggaa
accatcatctccgaaggacaggcgctgtacgtcacctgcaaactgcagaactgcaccgag
gccaataaaggcaagccgttccccggctacattgaccccaattcccttgtggtgcaagac
gagtatgtgtttgtccaggtgtcaactggtgggcgtccaatctactacgtgtcagccaag
cgggaagtcttcacaccaatgaagttacccaagtacaccttgcctaaggacctgcatgtg
atcagtacggatgagaaccgggtggttgcggcggtgcaggagtggaaccagaacgacacc
tacaacctgtacgtgtcagagactggaggggtcttctacaccctggccctggagaacgta
gtcagcagcatggggcacgagggcaacgtcatgatagacctgtatgaggtggcgggtata
aaagggatgttcctcgccaacaagaagatggacaacgtggtgaagacctatatcacctac
aacagagggagagactggaggctactgcaggctcccattgctgacctgaggggcaacagc
atccactgtgaactaccatactgttccctacacctccacctacatgtgtcggccaacccc
tacacatcagggaatatcgagagtaaggactctgcaccggggatcattgtggcctcaggc
tccatcggagcggagttgaccaccagcaacgtgagcatgttcatcacctcggatgccggc
aacacctggagacagatctttgatgaggagtacagtgttctctacctggaccaaggaggg
gctctggtggctataagacacactccactccccatccgacacctatggatgagtttcgac
gaggggagacagtggaataaatacagtttcaccatgtcgcccctgtttgtggacgggtta
ctaggggagccgggggaggagactctcattatgacgatctttggccacgtcagtcaccgg
tcagagtggcagctggtcaagattgacttcaggtccatcttcaaccggagatgtacagag
ggggactaccagacatggcacctacacaaccagggcgagccgtgcatcatgggagtgaaa
agaatctacaggaagttgaagcccgtagccaggtgcgttatgggtaagacgtactcggtg
acgatgacctcggcgccctgcgactgcacagaggccgactttgagtgtgactatggctac
gagaggcgaagtgacggcaagtgcacccccgccttttggttcctcccatcgtccatgtct
agaagctgtaccacagggactactttcatcaacagcactggctacaggaaggttgtgtcc
aataactgcacagcgggagtgatagcagagtacatggccaggaggcagcactgtcctacc
caggcccccaaaggcttgcacctcgtcaccagtgaaggaaagctgacagctacgctgggc
accaatgtcaccttcctggtgtttcttgaagagggagacggagccaggacgagcatcatg
gtggacttcggggacggtcacgctctgacctactccaacgtgagctccatagaggatggg
atcaagcacatctacaaggctgtggggatcttccgtgtgaccgctacaggagagaacagc
ctggggtcggagagcgtggtgctctacctccatgtcacatgtcagctggagtatatccat
ctctccgctccctttgtggcggtgaagagtaaggaagtcaacctcaccgctgtgctgtgg
cctagccaagtgggaacagtcacctacatctggtggttcggaaataacactgagccgata
atcaccctggaagggagtgtggcgtgcacgttctcccgggaaggcgtcaacactgtcacc
gtgcaggtgtccgctgggaacggcatcctgcaggaccggaaaaccatcgctgtccacgaa
tatttcaggtcacatctactagccttctcatctaacctggatgaccacaaccccgacgtg
gccgaatggagactggacgtcagcagagtcatcaagaactccatggttcaggccacgggg
atgagcccggagcgactccttgtcactgtcctaccagggttgcccacggcagcagagttt
ttcctcctgccagacaaagagttaacggagggcaagccggagaagaactcagctcattta
gaccagctctctgaaatcttgcttagcgccctcaaccaaaacctggtccagttcaccctt
cggcctggggtccaggtcacagtatatgctgcacatttgtcagcagcgcccctagtggac
acgagtgagaaccacagcggctcggccatgctgatgctgctgtcggttgtggttctgggt
ttggcgatatttgtcgtctacaaattcaaaaggaagatcccaggcctcaacgtctatgca
cagatgcagaacgaaaaagaacaagaaatgatgccaagtccagtaagtctgacggaaagc
accctggtgtccccgaacactccgagggagctggtgacttctccggagcttatggacacc
gagttgaacacacggcccatcggatgcatcaaacctcacgcacatgtcaagttctcaaat
gaactccccacgtacatcaacatttaa
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