Coregonus clupeaformis (lake whitefish): 121533090
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Entry
121533090 CDS
T08357
Name
(RefSeq) collagen alpha-1(XVII) chain-like
KO
K07603
collagen type XVII alpha
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
121533090
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Gene cluster
GFIT
Motif
Pfam:
Collagen
FlgT_N
Motif
Other DBs
NCBI-GeneID:
121533090
NCBI-ProteinID:
XP_045076949
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Position
7:8342495..8372261
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AA seq
1408 aa
AA seq
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MDNLTTTKIVNAGGGGGAGGMVVKETVTTTTRLTSLPPKGVTSSVVSSQKSVSSSSSSGG
SVVERKLITQSGGSSSSSYPIKSSCLSSSSGLLSTGVGESTSRAVTGGSSSVLVSSSSGS
SSSAAAGASFGASKTSGSLSISGGGLSSSSSSSFFTGSSSGGSNSGFVSSSKGAGGGGGG
SSVTDYSSGSSSGFASSSGTGIGGGGSSRAKMSAGGLGSVTVSTVTKSNYSSLAGVGSGS
VKRGGAQGSASSAVSYSPTPTERKSMTTTMTARSVGYEGSSSENSSPEYTRREYAAASTA
ASAPSRGRTNSRESEIRCRLQSASPTAKKWTELGDVKRLLKGSRSSSISPPRSPTSTLPI
PRKASVETRTMSKCSHSGQYESATLDSGMPSYMWSGSSAGGYGYHTNAINLSPTSTLQHS
PTTLTATGLQNNLALSSTSMNSGLSASSTVYGMQNNLATTTGGILTANGVNAQTVYGVQR
NVTSTGVSTTTVAPGSPTSGDVFTKDYKFILLEKENAPVKKETERLIMTKDTGKQFSSAA
TAIAYSEDSLKKEKKKVSSFEETATARTTETNVSTKHKATYAEIRKDESGGGLGFWFCCS
WWKWLLGLLLGLLLLLGILFGLIALAEEVKRLKARVDALEQASSSSSAHSSRLSSSSAIN
IIDPLESAYIDKTSFSSTTLLRSDNGINLGASAGAGPGTATGPGQDPVALQRAVQQIVRT
ELQSDTVRATLAHSMKGARGEPGTKGDQGGPGVKGDNGFPGLPGPPGQMGHSGQEGPRGP
KGNAGEAGAEGLPGQRGREGPTGSRGEPGPPGFGEKGDRGSPGEPGGSGPAGTAGPVGPK
GSMGAQGATGIPGTPGPQGFRGEAGAPGPKGEKGPAGPPGNKGETGEKGPRGLSGDPGQR
GLPGPEGAKGCKGPAGAPGADGEKGSRGDKGSDGLPGPRGPAGPPGDTGLPGIPGLQGPP
GIPGNPGQSGAKGEAGEPGRVINAAGSSSVAMPGPPGSPGPPGAAGSPGLSGPVGPAGLP
GTPGPKGEKGEEGEKGDEGKPGITVQTVETSEKRSPVAGLPGPPGPPGEPGAQGPLGKGL
PGPEGPRGEPGVPGVGVPGPQGEKGEPGSFVPNSGTFFAGPPGPAGPTGLPGSPGPQGYQ
GDPGQPGLPGVRGDPGVGFPGPQGRPGGPGPEGDSGPPGPQGPEGPEGQQGPKGEAGVPG
APGIPGYSSGGSSRSSPGAPGPPGPPGAPGRDGPPGSGAGTPDVRQYITEYLKSNGVREY
MSGPPGPPGAPGPPGGGSVESVDDLVSRVIAYIQSGGIASGVPGPPGPPGAPGGGGISLE
DIISLLQREEVRRYVIGPPGPAGPPGIPGIPWRGGYGFNTHEVAGRVLTLMNEQGMVGVL
GPPGPPGPPGLPGSYGDISYLLQSKSSD
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
atggacaatctaacgacaaccaagattgtaaatgctggtggcggtgggggcgctggtggc
atggtcgtcaaagaaacagtaaccacaacaacccggttgacatcactgccgccaaagggc
gtcactagctcagtcgtctccagccagaagagtgtttcgtccagcagttctagcggaggt
tctgttgtggagaggaagctcatcactcagagcggtggcagcagcagcagtagctatccc
ataaaatcctcatgtctctcttcaagtagtgggctgctctctactggagtaggagagtct
accagtagagccgtcacaggaggcagtagctcagtgctagtatcctcctcatctggtagt
tcctcctctgctgcagccggggcctcgtttggggctagcaagaccagcggctccctctcc
atctctggtggtggtcttagctccagctccagttccagttttttcactggttccagttct
ggtggttccaattctggttttgtctctagttccaaaggagcaggaggaggaggaggaggc
agttccgtcactgattacagttctggttctagttctggttttgcctctagttctggtacc
ggtatcggaggagggggttcttctagagccaaaatgtcggccggcggcttgggctctgtg
accgtttccacagttaccaagtccaactacagttctttggcaggggtggggtcagggagc
gtgaagaggggcggggcacaggggtctgcatcctctgctgtcagctactcccccaccccc
acagagagaaagagcatgaccaccaccatgaccgcccgctccgtgggctacgaaggaagt
tccagtgaaaactcatctccggaatacacaaggagagaatatgctgcagcaagtacagct
gccagtgcacccagcagagggcggaccaacagcagagagagtgagatcagatgcagactg
cagagtgcctctcccactgccaaaaaatggacggagctgggtgatgtgaagcgtctgctg
aaggggagtcgctccagcagcatcagcccccctcgctcccccaccagcaccctccctatc
cccaggaaggccagcgtggagaccagaaccatgtcaaagtgctcccattcaggccagtat
gaaagcgccaccctggactcaggcatgccttcctacatgtggtcaggctcctcggctgga
ggctatggttaccacaccaacgccatcaacctgtcccccacctccaccctccaacactca
cccaccacactcacagccacagggcttcagaacaacctggccctcagctctacatccatg
aactctggactctccgcctctagcactgtttacggtatgcagaataacctggccaccacc
actggtggtatcctaacagctaatggagtcaacgcacaaacagtctatggtgtgcagaga
aatgtcacaagcacaggggtgtccacaaccactgtggcacctggcagtcctaccagtgga
gatgtcttcaccaaagactacaagttcatactgctggagaaagagaacgcgcccgtcaag
aaagagacggagagactcatcatgaccaaagataccggcaaacagttctcctctgctgcc
actgctattgcctattctgaggactcactgaagaaggagaagaagaaggtatccagcttt
gaggagacagctacagccagaaccacagaaactaacgtgtcaacgaaacacaaggcaacc
tatgcagagatacgtaaggacgagtctggaggaggtctgggcttctggttctgctgctcc
tggtggaagtggctgctgggcctcctgctgggtctcctgctcctcctggggatcctcttt
ggactcattgccctggccgaagaagtcaaacgtcttaaagctcgtgtggacgccttggaa
caagcctccagctcttcctcagcccattctagtcgcctctcctcctcctcagccatcaac
atcatagaccctctggagtctgcatacatagacaagacctctttctcctctaccacactg
ctccgctctgataatggtatcaatctgggagcatcagcaggagcaggtccaggaacagcc
actggaccaggccaggaccctgtagctctgcagagggcagtacagcagatagtcaggacg
gagctgcagtccgatactgtacgagcaacacttgcacactcaatgaaaggagcaagagga
gaacctgggaccaaaggtgaccaaggtggtccaggagtcaaaggtgataatggattccct
ggcctaccaggtccaccaggtcagatgggtcacagtggacaggagggcccgaggggacct
aaaggaaatgcaggtgaagctggtgcagagggcctcccagggcagaggggccgagaagga
ccaacgggatcacgtggagagcctggtcctccagggtttggagagaaaggggacagaggt
tctcctggtgaacccggaggctccggacctgctggcactgctgggcctgttggacctaaa
gggtcaatgggtgctcagggtgctacaggtatcccaggaactcctggtccacagggtttc
cgaggtgaagcaggcgctccaggaccaaaaggcgagaagggaccagctggacctccagga
aataagggtgagacaggagagaaaggaccccgcggactatcaggtgacccaggtcaaaga
ggacttccaggaccagagggagcaaagggatgcaaaggacctgcaggagctcccggggct
gatggggaaaaaggctctagaggtgacaagggatcagatgggctgccaggtcccagagga
ccagcaggacctccaggagatacaggcctcccaggcattcccgggcttcaaggtccacca
ggtataccaggtaatcctggtcagtctggagctaaaggcgaagccggagaacctggtaga
gtcatcaatgcagctggttccagttcggtagccatgcccggacctccaggcagccccgga
ccacctggtgctgccggatcccctggactctcaggtcctgttggccctgctggtcttcct
ggaacgcctggtcccaagggagaaaagggagaggaaggagagaagggagatgagggaaag
cctggtattactgtacagactgtggaaaccagcgagaaacgttcacctgtggctggtctt
cctggccctccagggcccccaggagaaccaggtgcccagggtcctctaggtaagggtctc
ccaggtcctgaaggtcctcgaggagagccaggtgtaccaggtgttggcgtacccggcccc
caaggagagaagggagagccaggtagcttcgtgcccaactcaggaaccttcttcgctggg
ccaccaggacctgctggcccaactggtcttccgggatcaccaggaccccagggttaccaa
ggtgacccaggtcagcccggtttaccaggagttcgcggagatcccggtgtcggtttccct
ggaccccagggacgacctggaggtccaggaccagaaggggacagtggacctccagggccc
caaggtccagagggccctgaggggcagcagggtcccaaaggtgaggctggcgttccaggt
gctccaggaatccctggctactccagtggtggatcatccaggagttcccctggagcacca
ggcccacctggacctcctggggcccccggccgcgatgggccacctgggtctggggctgga
acaccggatgtccgtcaatacatcacagaatacctcaagagcaatggtgtcagggagtac
atgtcgggtcctccgggtcctcctggcgcaccggggccccctggtggtggatcagtggag
tcagtggacgaccttgttagtcgagtcatcgcatacatccagagtggaggtattgctagt
ggggtgcctggacctccaggcccacctggcgcaccaggcggaggcggtatatcgctagaa
gacatcatcagccttctacagagggaggaagtgcggcgttacgtcatcggtcctcctggc
cctgctggacctcctggcatcccagggatcccatggagaggtggctatggctttaacacc
catgaggtggctggacgagtcctcactctaatgaatgagcagggtatggtgggcgtgctc
ggaccccctggacctcccggcccaccaggcctacctgggtcttatggtgacatctcttat
cttctgcaaagtaagagctctgactag
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