Coregonus clupeaformis (lake whitefish): 121533108
Help
Entry
121533108 CDS
T08357
Symbol
taf5
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121533108 (taf5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cclu03021
]
121533108 (taf5)
03036 Chromosome and associated proteins [BR:
cclu03036
]
121533108 (taf5)
Transcription machinery [BR:
cclu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
121533108 (taf5)
Coactivators
SAGA/TFTC/STAGA complex
121533108 (taf5)
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
121533108 (taf5)
STAGA complex
121533108 (taf5)
TFTC complex
121533108 (taf5)
SAGA complex
121533108 (taf5)
SLIK complex
121533108 (taf5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
TFIID_NTD2
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_EML_2
EIF3I
Beta-prop_EML
WDR55
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
ANAPC4_WD40
Beta-prop_SCAP
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_IFT140_1st
Beta-prop_Vps41
WD40_RFWD3
Beta-prop_HPS5
Beta-prop_SPT8
Beta-prop_DCAF4
Beta-prop_DCAF12
WD_LRWD1
Beta-prop_Nup120_160
Beta-prop_WDR19_1st
LisH_TPL
VID27
Motif
Other DBs
NCBI-GeneID:
121533108
NCBI-ProteinID:
XP_041694814
LinkDB
All DBs
Position
20:885046..893289
Genome browser
AA seq
752 aa
AA seq
DB search
MAAVQDGQLNLEVEKDIKAEITNDDSGNINANSSSPGSTSSGGKSKSPAGSGEDQQTLLA
VLQFLKRNKLTESVDILRREAGLSADADDSPISESAGAGSSGAPNVGADGGDANSLLSRV
SIATPAALPATAPLAPPKVVAASGGEDQPDVNVVLSAYSQQGDPVLYPLYYNGLKKFIES
VLDCHRAELSQVFYPLFVHMYLELVYNNHENEAKQFFEKFSGDQECYYEEDLRILSSMSK
KEHMKGNETMLDFRTSKFVLRISRDSYQLLKRHLQERQNNQIWNIIQEHLYIDIFDGMPR
SKSQIDAMSGSLAGEAKRDANKAKVFYGLLKEPEIEVPLDDEDEEAENEEGKPKKKKPKK
DSMGSKSKKQDPNAPQQTRIPLPELKDSDKLDKIMNMKEATKKIRLGPDNLPSICFYSFL
NAYQGLTAVDFTDDSSLIAGGFADSTVRVWSVTPRKLRRVKSAADLSNIDKESDDVLERI
MDEKTASESKILYGHSGPVYGISFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYP
VWDTQFSPYGYYFISGGHDRVARLWATDHYQPLRMFAGHLADITCTRFHPNSNYVATGSA
DRTIRLWDVLTGNCVRILTGHKGPIHSLAFSPNGKFMASGATDSRVLLWDIGHGLMVGEL
KGHTDTIYALKFSRDGEILASGSMDNTVKLWDTLKAFDDVELDDFTAATGHIHLPENSQE
LLLGTYMTKSTPVIHLHFTRRNLLLAAGAYNP
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgtgcaagatggtcagctcaatctggaggtcgaaaaagacataaaagcagaa
ataacaaacgatgattcgggaaatatcaatgcaaactcttcgtcacccggttctacgtct
tcgggcggtaaatcgaaatctccggcgggatcaggagaagatcaacagacactgctcgcg
gtgctgcaatttctcaagaggaataaattgacggagtcagtcgacattttgcggcgagaa
gcgggcttatctgcagatgcagatgattccccgatatccgagtcggcgggagctggatcg
agtggcgcgccaaatgtcggtgctgatgggggtgatgccaactctctcctcagccgagtg
tcaatcgccacccccgccgcactcccggccaccgcacccctcgcgccaccaaaagtggtg
gcagcatcaggtggggaagaccaaccagacgtcaacgttgtcttgtcagcctatagccag
cagggagaccctgtcctgtacccactctattataatggcctgaagaagtttattgagtct
gtcctggactgtcacagagccgaactctcccaggtcttctaccccctgtttgtccacatg
tatctggagctggtctacaacaaccacgagaatgaagctaaacagttttttgaaaagttc
agcggggaccaggagtgttactatgaggaggacctccgcatcctctccagcatgtccaag
aaggaacacatgaagggaaatgagaccatgctggacttcaggaccagcaagttcgtcctt
cgcatctcccgagactcctaccagctgctgaagaggcacctgcaggaacgtcagaacaac
cagatctggaatattatacaggaacatctctatattgatatatttgacgggatgcctcgg
agtaaaagtcagattgatgccatgtcgggcagtctggcgggggaggccaagagagatgcc
aacaaagccaaggtgttctatggtcttctgaaggagccagagatcgaggtacctctggat
gatgaggatgaggaggcagagaacgaggagggcaaacccaagaagaagaaacctaagaag
gacagcatgggctccaagagcaagaaacaggatcccaatgcacctcaacaaactagaatc
cccctccccgagctgaaggactctgacaagctggacaagatcatgaacatgaaggaggcc
actaagaagatccgtctgggcccagacaacctaccctccatctgtttctactccttcctc
aacgcttaccagggtctgacagcagtggacttcacagatgactccagtctgatcgcgggg
ggcttcgctgactccaccgtgagggtgtggagcgtcacacccaggaaactacgccgggtc
aaatctgcagcagacctgagtaatattgataaagagtctgatgacgtgttggagaggatc
atggatgagaagacggccagtgagtctaagatcctgtatggacacagtggaccagtatac
ggcatcagcttcagccctgacaggaactacctgttgtccagttctgaggacggtacggtc
agactgtggagtctgcagacattcacctgtctagtggggtataaaggacacaactaccct
gtctgggacactcagttctcaccctatgggtactactttatctctgggggacatgacaga
gtcgctcgtctgtgggcgacggaccactaccagcccctgcgtatgttcgctggtcacctg
gctgacatcacgtgcacccgcttccaccccaactccaactacgtggccacaggttcagct
gaccgtaccatccgcctctgggacgtcctgactggcaactgtgtccgcatcctcacgggt
cacaagggccccatccattccctggccttctcccccaatgggaagttcatggcctcggga
gcaactgacagcagggttctactgtgggacattggtcacggcctgatggtcggagagctg
aagggacacactgacaccatctacgccctcaagttcagcagggacggagagatactagcc
tcaggctcaatggataacactgttaaactgtgggatacactgaaggcctttgatgatgtg
gagctggatgatttcaccgcggcaacgggtcacatccatctaccagagaactcacaggag
ctgttgctaggcacctacatgaccaagtccacccctgtcattcacttgcacttcacccgc
aggaacctactgctggctgcaggggcctacaacccatga
DBGET
integrated database retrieval system
