Coregonus clupeaformis (lake whitefish): 121533110 Help Entry 121533110         CDS       T08357                                  Symbol pdcd11 Name (RefSeq) protein RRP5 homolog   KO K14792   rRNA biogenesis protein RRP5 Organism cclu  Coregonus clupeaformis (lake whitefish) Brite KEGG Orthology (KO) [BR:cclu00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03009 Ribosome biogenesis [BR:cclu03009]     121533110 (pdcd11) Ribosome biogenesis [BR:cclu03009]  Eukaryotic type   90S particles    Other 90S particles     121533110 (pdcd11) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  S1_RRP5 S1 Spt6_S1 HAT_PRP39_C HAT_PRP39_N HAT_Syf1_CNRKL1_N OB_RRP5_4th Suf TPR_19 TPR_14 HAT_Syf1_CNRKL1_C OB_RRP5 ARM_TT21 TPR_CcmH_CycH TPR_16 TPR_15 ARM_TT21_5th NRDE-2 Motif Other DBs NCBI-GeneID:  121533110 NCBI-ProteinID:  XP_041694816 LinkDB All DBs Position 20:895064..916591 Genome browser AA seq 1814 aa AA seqDB search MASTEEDFPRGGKAKQTTESKAEPVRRHTEVDNLFETHEPEESKKRKGQKEDTLKKAKRQ KTSKEEALKLNTTTSVDILQLKSLKVGTLLLGCVKEVADFEVTINLPSGLLGYLNISNIS DSYTKTLSDQLDSEEAEEIFSLPSLFSPGMLVRCVVARLDTAKGGSVSIQLSINPKEVNK GLSTSSLKAGLILSGCVESIEDHGYLVDLGIKGTKAFLPKQAAKDKTNSPKELKVGQYVT SLLEEVKNDGRVVRLSVSPTAVAQTVADTEHGWTLTNLLPGLLVKAQIKKVTLHGLILEF LSSFIGLVDFMHLEPEQASTFNEGDNVKACVLYVEPSTRLVGLSLRSHLLQPGGDVELVA TERIGEVAHGCKMTALHHLSGAMLELPDQTVVFVHRNHMKEPREAFNLNRVMAKPEHTCR IMDFSPMEQVHLVSLRQSIINAPLFRRYHDIQPGQIVQGTVTSLQSHGMMVKVTDYIRGL VPRTHLSDIILKNPEKKYAVGMTIKCRVLSVDPQEKKLTLTRKRALVDSTLPLFLTYEDA RRGRVSHGFIVCVKDFGCIVRFYGEVKGVVPPNELSTEPVIVPENMFYVGQVVKAKVLNC DVEKEKLLLSFKAVAGGDTEGPPKTKFDFEVGKKVEVKVVSKVLTGLEVSILPEETTALL PTMHFSDHVSNCPLLWEGLQEGDIISNIVCLSKNRQNITLTKKPTVKSVLEEGDVVAKEF SDITVGMQLIGWVKNIMPYGVFVEFPYGLVGLAPKAAMSDKFVSDTAAHFLLGQTVVAKV TNLDEEKPRFLVSLKVSEVTSPERDSQARLIRGLQERKAVMEMMASRGDSDLLKQLSAVT IGQKMKMSVDEVREDGSVTFKSDELSAATVLANKDHAPGKLVMGQKCMPVVLHIDLLTSQ VYVSLLVKLTGKRKEVEAGSTHTATVQHADRDFAVISLGDTGQLTVIQTTNHPNETFRFD SEKLTAGKTLTITVTESCCEELEGLPLVSWELAAPKRERLISDSKGSKGTYRYGDVVKGK VKTVKPTCVLVTLDDGSTGCVHVSEIQEVVCVGTFPTSLLKIGSEVTARVIGGREGNSHR FLPFSHPNFTYSMPELTLLPSKLKEDADVKPVKTKQKLKSYQVGDNVICFVSKYFPERKC LEVTTGPSVTGTVELLAMTSDPKDAKHPEKLFKLGQAVSAKVVTVSSSKPSRLSLSLTGV HKLEKGSVIIGLVQKLDPNLGLLVKLPFSAMGTVAVEDLADNYKPKPLEPYSKDQLVRCC VVGEEKSNWQLSLRPSRMNPEKASVVDPEIVSLDDLTEGQIIRGYVRTVNAQGVFVSLSR SIKGRAQFQKATKYFVARHQDYAKKVPQTTLLTTKVLSINKENGLVDLSLLQEDTGKPDV LPESLGLHLRLTGEAKEKRDVIKKRKRTESESKQGPAEKVSKKKKTKKKGKGEDSDSGVE VYFREEEEDDEEEEKKSEPAEVVKPVPVQPARLQVTGGFSWDAALSALKPASAALGAEDS SDREDDEVKTKPQKKSRHEQEVEKREAEKALTKLETELMDPGLRPQTAASFERLLLSSPD SSLLWLQFMAFHLQATQIEQARAVAERALKTISFREEQEKLNVWVALLNLENLYGTEESL QKVFERAVQYCEPMPVYQQLADIYAKCQKTKEAEGLYKTMVKRFRQDKAVWLSYGTFLLQ QGQSDAANALLQRAIKSLPIKDNVDLIAKFAQLEFRYGDVERGKTMLDKILTSYPKRTDL WSVFIDLMVKHGSQKEVRAVFDRVIHLSVAVKRIKFFFKRYLEYEKKNGTPESIQAVKEK ALEYVESKGPEAAS NT seq 5445 nt NT seq  +upstreamnt  +downstreamnt atggcatcaacggaggaagacttccctcgtggagggaaagccaagcagaccactgagagt aaagctgaacctgtgagaaggcatacagaagtggacaatctgttcgagacacatgaacca gaagaatccaagaaaaggaagggacagaaagaggataccttgaagaaagctaagaggcaa aagacgagcaaagaggaggctctgaagctcaatacaacaacctctgtagatatcctacag ttaaagagcctgaaggtgggtaccctactgctgggctgtgtgaaggaggtggcagatttt gaggtgacaattaacctgcccagcggccttttgggatacctgaacatttccaatatctcg gactcgtacaccaagacattgagtgaccaactggactctgaagaagcagaggagatcttc tctctccccagcctcttctccccgggcatgctggtcaggtgtgtggtagccaggttggac actgccaaaggaggatcggtcagcattcagctgtcaatcaatcccaaagaggtcaacaag ggcttgagtactagctctctgaaggctggcttgatcctgagtggttgtgtggagagtatt gaggatcacggctacctggttgacctcggcatcaagggaaccaaggccttcctgccaaag caggcagccaaagacaaaaccaatagtcccaaagagctgaaggtgggccaatacgtgact tctctgttggaggaggtgaagaacgatgggcgtgtggtccgtctgtccgtcagccccacg gcggtggctcagactgttgccgacacagagcacggctggacccttaccaacctgctgcct ggcctactggtcaaagcccagatcaaaaaggtgaccctacatggtctgatcctggagttc ctctcctccttcatcggcctggtggactttatgcacctggaaccagaacaggcctccaca ttcaacgagggagacaatgtaaaggcctgtgtcctttatgtggagccatccacccggctg gtgggcctttccctgcgcagccacttgctgcagccagggggcgacgtggagctggtggcc actgagaggataggggaagtggcacatggctgcaagatgaccgctctccatcacctgtct ggagccatgctggaactgcctgaccagactgtggtgtttgtacataggaaccacatgaag gagcccagggaggcgttcaacctgaaccgtgtcatggccaagcctgaacacacctgtagg atcatggacttcagcccaatggagcaggtgcacctggtcagcctgcgccagagcatcatt aatgccccgttattcagaagataccatgacatccaacctggacagattgttcagggcaca gtgacgtccctccagagccatggcatgatggtgaaggtgacagactacatcagaggcctg gttccccggacacacctctctgacatcatcctcaagaaccccgagaagaagtacgcagtg ggcatgaccatcaagtgccgggtgttgtcggtggatccacaggagaagaagctgacccta accaggaagagggccctggtagactccaccctccccctgttcctgacctacgaagacgcc cgccgtggtcgcgtctcccacggtttcatcgtctgcgtcaaggactttggctgcatcgtc cgtttctacggcgaagtcaagggggtggtgccccccaacgagctcagcacggagccggtg atagttcctgagaacatgttctacgtcggacaggtggtgaaggctaaagtgctgaactgt gatgtggagaaggagaagctccttctgtccttcaaggcagtggcaggaggagacactgag ggaccgcctaaaaccaagtttgactttgaggttgggaagaaagtggaggttaaggtggtg agtaaagtccttaccggtttggaggtgtccattctgccagaggagaccaccgccttgcta cccacgatgcacttctccgaccacgtgtccaactgcccattgctgtgggaggggctgcag gagggtgacatcatctctaacattgtctgcctcagcaagaacagacagaatattaccctg accaaaaagcccactgtaaagtcagtcctggaggagggggacgtggtggctaaggagttc tctgacatcacagttgggatgcagctgattggctgggtcaagaacatcatgccctatgga gtgtttgtggagttcccctatggcctggtgggccttgcccctaaagcggccatgagtgac aagtttgtcagcgacacggctgctcacttcctgctgggccagacggtggttgccaaggtg accaacctggacgaggagaagcccaggttcctggtcagtctcaaggtgtcagaagtcacc tcccctgagagagacagccaggccaggctgatccgaggcctgcaggagaggaaggccgtg atggagatgatggcaagcagaggtgactctgacctgctcaagcagctgtctgcggtgacc ataggccagaagatgaagatgagcgtagatgaggtgagggaggacgggagtgtcaccttc aagtcagacgaactcagcgcagccaccgtactggccaacaaggaccatgcgccgggtaaa ttggtgatgggacagaagtgcatgccggtagtcctccacattgacctcttgacctctcaa gtctacgtgtccctcttggttaaactgaccggcaagaggaaagaggtggaggcagggtcc acacacactgccacagtgcagcacgccgaccgcgacttcgccgtcatctcattgggcgac acgggtcaactgacagtcatccaaaccaccaatcaccccaacgagactttccgctttgac tcggagaaactgaccgccggtaaaaccctgacgatcactgtcaccgaatcctgctgcgag gaactagaagggctccccctagtgtcctgggaactcgccgcgcccaaacgtgagaggtta atctctgactccaaggggtcaaagggcacatatcgctacggcgatgtggtcaagggaaag gtgaagacagtgaagcctacgtgcgtgctggtgacgctagatgacgggagcacggggtgc gtgcacgtgtcggagatacaggaagtggtgtgcgtgggaacgttccccacgtccctcctc aagataggaagtgaggtcaccgcccgggtcatcggaggacgggagggcaacagtcacagg ttcttgccgttctcccatcccaacttcacttactccatgcctgaactcacacttcttccc agtaagctgaaagaagatgcagatgttaagcctgtcaagaccaaacagaagctgaagagt tatcaggtcggagacaacgtcatttgctttgtgtcaaagtactttccagagaggaagtgt ctagaagtgaccactggtccctcagtaactggaactgttgaactactggccatgacctct gaccctaaagatgccaaacacccagagaagctgttcaagttgggccaggcggtcagtgca aaggtggtgacagtcagctcctccaagccctcacgcctctcattgtctctcactggtgta cacaagttggagaagggcagtgtaatcatagggttggtgcagaagctagatcccaacctg ggtctgctggtgaagctgccattcagcgccatgggaacggttgccgtggaggacctggcc gacaactataagccaaaacctctggagccgtacagcaaggatcagctggtcaggtgctgc gttgtaggcgaggagaaaagcaattggcagttgtccctccgcccttcgaggatgaaccca gagaaggcctcagtagtggacccagagattgtgtctttagacgacctgacagagggccag atcatcagaggctatgtgagaactgtcaatgcacagggagtctttgttagtttgtctaga tccataaagggcagagcccagttccagaaggccaccaagtactttgtggctcgccaccaa gactatgccaagaaagtaccacagaccacactgctcaccacgaaggtcctcagcatcaac aaagaaaacgggctggtagatctgtctctgctccaagaggatactgggaaaccagacgtg ctcccagaatccctggggctgcatctacgcctgacaggagaggccaaggagaagcgtgat gtcatcaagaagaggaaacgcacagagtcagaaagcaagcagggacctgcagagaaagtt tccaagaagaagaagactaagaagaaggggaaaggggaggacagtgacagcggagtggag gtgtacttcagagaagaagaggaggatgacgaggaggaggaaaagaagtcagagcctgcg gaggtagtgaagcctgttccagtgcaaccagccagactgcaggtgaccggagggttctcc tgggatgcagcgctgagtgccctgaaaccagcctccgctgccctgggggcagaagactcc agcgatagggaggacgacgaggtgaagactaagccccagaagaagtctcgccacgagcag gaggtggagaagcgggaggctgagaaggccctgaccaagctggagacggagctgatggac ccaggcctgcgaccccagacggcggccagctttgagcgcctgctactcagctcccctgac agctctctgctctggctgcagttcatggccttccacctgcaggccacacagatagaacag gctagagcggtggccgagagagccctgaagactatctccttcagagaagagcaggagaag ctgaatgtttgggtcgctctgttgaaccttgagaacctgtatgggacagaggagagtctt cagaaggtgtttgagcgggccgtgcagtattgtgaacccatgcccgtctaccagcaactg gctgacatctacgccaagtgtcagaagactaaggaggcggaaggtctgtataagaccatg gtgaagcggttccgtcaggataaggctgtgtggctgagctatgggaccttcctgcttcag cagggtcagagtgacgcggccaacgccctgctacagagggccatcaagagcctgcctatc aaagacaatgtggatctgatagctaagtttgcccagctggagttccgctacggagacgta gagcgaggaaagaccatgttggacaagatcctgaccagctaccccaaacgcaccgacctg tggtccgtcttcatagacctcatggtcaaacacggctcccagaaggaagtccgggctgtg tttgaccgtgtgatccacctgagtgtagcggtgaagaggatcaagttcttcttcaagcgt tacctggagtatgagaagaagaatggcacgccagagagcatccaggctgtcaaggagaag gccctggagtacgtagagtctaaagggccagaggccgccagctag

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