Coregonus clupeaformis (lake whitefish): 121533170
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Entry
121533170 CDS
T08357
Symbol
xpo1a
Name
(RefSeq) LOW QUALITY PROTEIN: exportin-1
KO
K14290
exportin-1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03008
Ribosome biogenesis in eukaryotes
cclu03013
Nucleocytoplasmic transport
cclu03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121533170 (xpo1a)
03008 Ribosome biogenesis in eukaryotes
121533170 (xpo1a)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
121533170 (xpo1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121533170 (xpo1a)
03009 Ribosome biogenesis [BR:
cclu03009
]
121533170 (xpo1a)
03016 Transfer RNA biogenesis [BR:
cclu03016
]
121533170 (xpo1a)
03036 Chromosome and associated proteins [BR:
cclu03036
]
121533170 (xpo1a)
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
121533170 (xpo1a)
Ribosome biogenesis [BR:
cclu03009
]
Eukaryotic type
Pre-40S particles
Export and cytoplasmic maturation factors
121533170 (xpo1a)
Pre-60S particles
121533170 (xpo1a)
Transfer RNA biogenesis [BR:
cclu03016
]
Eukaryotic type
tRNA transport factors
tRNA export factors
121533170 (xpo1a)
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
121533170 (xpo1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CRM1_C
Xpo1
CRM1_repeat_2
CRM1_repeat_3
CRM1_repeat
IBN_N
TPR_TNPO3_IPO13_2nd
BspA_v
Motif
Other DBs
NCBI-GeneID:
121533170
NCBI-ProteinID:
XP_045061160
LinkDB
All DBs
Position
20:2055929..2070480
Genome browser
AA seq
1070 aa
AA seq
DB search
MPANMTMLADHAARQLLDFSQKLDINLLDNVVNSMYYDVGSQQRMAQEVLTNLKDHPDAW
TRVDTILEFSQNMKTKYYALQILETVIKTRWKILPRNQCEGIKKYVVGLIIKTSSDAANV
EKDGVYIAKLNMILVQILKQEWPKHWPTFISDIVGASRTSESLCQNNMIILKLLSEEVFD
FSSGQMTQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNXPLVQATLETLLRFLNWIPLGY
IFETKLISTLVYKFLNVPMFRNVTLKCLTEIAGVSVNQYEEQFVNLFTLTMCQLKQMLPL
NTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLIEKRPNLRETLMEALHYMLLVSEV
EETEIFKICLEYWNHLAAELYRESPFSTSTSPLLSGSQHFDVPPRRHLYLPVLSKVRTLM
VSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYADTERIMTEKL
HNQVNGTEWSWRNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAII
ASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFV
QVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQAVQEHLIEKYMLL
PNQVWDSIIQQATKNVDILKDAETVRQLGSILKTNVRACKAVGHPFVVQLGRIYLDMLNV
YKCLSENISSAIQTNGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVGENFVPPL
LEAVLIDYQRNVPAAREPEVLSTMATIVNKLGGHITGEIPKIFDAVFECTLNMINKDFEE
YPEHRTHFFYLLQAVNSQCFPAFLSIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILYTL
LQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLVEEGKISA
ALNPASQNNQGYVQEYVANLLKTAFPHLQDAQVKVFVTGLFSLNQDIPAFKEHLRDFLVQ
IKEFAGEDTTDLFLEERETSLRQAQEEKHKLQMSVPGILNPHEIPEEMCD
NT seq
3213 nt
NT seq
+upstream
nt +downstream
nt
atgccagcaaacatgacaatgttggcagatcatgcagcaagacagctgctagacttcagt
caaaagctggacatcaatctgctggacaatgtagtcaactccatgtactatgatgtcgga
tcacagcaacgcatggcacaggaggtgctgaccaacctgaaggatcacccagatgcatgg
acacgagtcgacaccatcctggagttttctcagaacatgaagactaaatactatgcactg
caaattctggagactgtgatcaaaacacgctggaagattctccccagaaatcaatgtgaa
ggaataaagaagtatgtcgttggtctgattatcaagacctcatctgatgccgcaaatgtc
gagaaagatggagtgtacattgcaaaactcaacatgatcctcgtacagatcctgaagcag
gagtggcccaaacactggcccaccttcatcagtgacatcgtgggtgccagccgcaccagc
gagagcctgtgtcagaacaacatgatcatcctcaagctgctcagcgaggaggtctttgac
ttctccagcggacagatgacccaggtcaaggccaagcacctgaaggacagcatgtgcaat
gaattctcgcaaatattccagctctgccagtttgtcatggaaaactcccagaatngcccc
ctggtccaagccacactcgaaactctcctgcgtttcctgaactggatccccctggggtac
atatttgagaccaaattgatcagcactctggtgtacaagttcttgaacgtgcccatgttc
cgcaacgtgacgctgaagtgtctgacggagatcgccggcgtgagcgtcaaccagtacgag
gagcagtttgtcaacctctttacgctcaccatgtgtcagctcaaacagatgctccccctg
aataccaacatccgcctggcgtattccaacggcaaggacgacgagcagaacttcatccag
aacctcagcctgttcctctgcaccttcctcaaagagcatggacagctcatcgagaagagg
cccaaccttagggagacactcatggaggctctgcactacatgctgctggtgtctgaggtg
gaggagacggagatctttaagatctgtctagagtactggaaccacctggcggccgagctc
tacagggagagccccttctccacctctacctcccccctgctctctgggagccagcacttt
gacgtgcccccccgccggcacctctacctgcccgtgctctcaaaggtgcgtacgctgatg
gtgagccggatggccaagccagaggaggtgctggtggtggagaacgaccagggagaggtg
gtccgagagtttatgaaggacacagactcaatcaacctctataagaacatgagagagaca
ctggtctacctgacccatttagactatgcggacacggagcgcatcatgacggagaagctg
cacaaccaggtgaacgggacagagtggtcgtggaggaacctgaacacgctatgctgggcc
atcggctccatcagcggggccatgcacgaggaggacgagaagaggtttctggtcaccgtc
atcaaggacctgctgggcctctgtgagcagaagagggggaaggacaacaaggccatcatc
gcctcaaacatcatgtacatcgtgggccagtacccacgcttcctccgagcccactggaag
ttcctcaagactgtcgtcaacaagctctttgagttcatgcacgagacccacgacggcgtg
caggacatggcgtgcgacaccttcatcaagatcgcccagaagtgccggcgccactttgtc
caggtgcaggtgggtgaggtgatgcccttcatcgacgagatcctcaacaacatcaacacc
atcatctgtgacctccagccccaacaggtgcacacgttctacgaagcggtgggttacatg
attggggcccagacggaccaggctgtgcaggagcaccttatagagaagtacatgctgcta
cccaaccaggtgtgggacagcatcatccaacaggcaaccaagaatgtggacatcctgaag
gatgcggagacagtgcgtcagctgggcagcatcctgaagaccaacgtgcgggcctgcaag
gccgtgggacaccccttcgtggtgcagctgggacgcatctacctggacatgctcaacgtc
tacaagtgtctgagtgagaacatctcctctgccatccagaccaacggagagatggtgacc
aagcaacccctgatccggagcatgaggacggtgaagagagaaacgctcaagctgatctca
ggttgggtcagccgctctaacgacccacaaatggtgggggagaactttgtcccgcccctg
ctggaggccgtactcatcgactaccagcgcaacgtccccgcagccagagagccagaggtg
ctcagcaccatggcgaccatcgtcaataagctgggcggacacatcaccggggagattccc
aagatcttcgacgccgtcttcgagtgcactttgaacatgatcaataaagactttgaggag
tacccagagcataggacccatttcttctacctcctccaagcggtgaactctcagtgcttc
ccggccttcctctctatacccccggcccagttcaaactggtgctggactccattatctgg
gccttcaaacacaccatgaggaacgttgcagacactggtctgcagattctttacaccctg
ctgcagaacgtggctcaggaggaggctgccgcacagagcttctaccagacctatttctgt
gacatcctccagcacatattttccgtcgtcacagatacctcgcacacagcagggctaacc
atgcacgcgtccatcctggcatacatgttcaacctggtggaggagggtaaaatcagcgcc
gccctcaacccagccagccagaacaaccagggatacgttcaggagtacgtggccaacctg
ctcaagactgccttcccccatctacaagatgcccaggtgaaggtgtttgtaacaggtctg
ttcagcttgaaccaggacatccctgccttcaaggagcacctgagggacttcctggtgcag
atcaaggagtttgctggcgaggacaccacagacctgttcctggaggaacgggagacgtcg
ctgcggcaggcccaggaggagaaacacaaactgcagatgtccgtccccggcatcctcaac
ccccatgaaatcccagaggagatgtgcgactga
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