KEGG   Coregonus clupeaformis (lake whitefish): 121533170
Entry
121533170         CDS       T08357                                 
Symbol
xpo1a
Name
(RefSeq) LOW QUALITY PROTEIN: exportin-1
  KO
K14290  exportin-1
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Pathway
cclu03008  Ribosome biogenesis in eukaryotes
cclu03013  Nucleocytoplasmic transport
cclu03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    121533170 (xpo1a)
   03008 Ribosome biogenesis in eukaryotes
    121533170 (xpo1a)
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    121533170 (xpo1a)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cclu03019]
    121533170 (xpo1a)
   03009 Ribosome biogenesis [BR:cclu03009]
    121533170 (xpo1a)
   03016 Transfer RNA biogenesis [BR:cclu03016]
    121533170 (xpo1a)
   03036 Chromosome and associated proteins [BR:cclu03036]
    121533170 (xpo1a)
Messenger RNA biogenesis [BR:cclu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Ran-mediated transport factors
     121533170 (xpo1a)
Ribosome biogenesis [BR:cclu03009]
 Eukaryotic type
  Pre-40S particles
   Export and cytoplasmic maturation factors
    121533170 (xpo1a)
  Pre-60S particles
    121533170 (xpo1a)
Transfer RNA biogenesis [BR:cclu03016]
 Eukaryotic type
  tRNA transport factors
   tRNA export factors
    121533170 (xpo1a)
Chromosome and associated proteins [BR:cclu03036]
 Eukaryotic type
  Centrosome formation proteins
   Centrosome duplication proteins
    Regulators of centriole replication
     121533170 (xpo1a)
SSDB
Motif
Pfam: CRM1_C Xpo1 CRM1_repeat_2 CRM1_repeat_3 CRM1_repeat IBN_N TPR_TNPO3_IPO13_2nd BspA_v
Other DBs
NCBI-GeneID: 121533170
NCBI-ProteinID: XP_045061160
LinkDB
Position
20:2055929..2070480
AA seq 1070 aa
MPANMTMLADHAARQLLDFSQKLDINLLDNVVNSMYYDVGSQQRMAQEVLTNLKDHPDAW
TRVDTILEFSQNMKTKYYALQILETVIKTRWKILPRNQCEGIKKYVVGLIIKTSSDAANV
EKDGVYIAKLNMILVQILKQEWPKHWPTFISDIVGASRTSESLCQNNMIILKLLSEEVFD
FSSGQMTQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNXPLVQATLETLLRFLNWIPLGY
IFETKLISTLVYKFLNVPMFRNVTLKCLTEIAGVSVNQYEEQFVNLFTLTMCQLKQMLPL
NTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLIEKRPNLRETLMEALHYMLLVSEV
EETEIFKICLEYWNHLAAELYRESPFSTSTSPLLSGSQHFDVPPRRHLYLPVLSKVRTLM
VSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYADTERIMTEKL
HNQVNGTEWSWRNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAII
ASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFV
QVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQAVQEHLIEKYMLL
PNQVWDSIIQQATKNVDILKDAETVRQLGSILKTNVRACKAVGHPFVVQLGRIYLDMLNV
YKCLSENISSAIQTNGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVGENFVPPL
LEAVLIDYQRNVPAAREPEVLSTMATIVNKLGGHITGEIPKIFDAVFECTLNMINKDFEE
YPEHRTHFFYLLQAVNSQCFPAFLSIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILYTL
LQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLVEEGKISA
ALNPASQNNQGYVQEYVANLLKTAFPHLQDAQVKVFVTGLFSLNQDIPAFKEHLRDFLVQ
IKEFAGEDTTDLFLEERETSLRQAQEEKHKLQMSVPGILNPHEIPEEMCD
NT seq 3213 nt   +upstreamnt  +downstreamnt
atgccagcaaacatgacaatgttggcagatcatgcagcaagacagctgctagacttcagt
caaaagctggacatcaatctgctggacaatgtagtcaactccatgtactatgatgtcgga
tcacagcaacgcatggcacaggaggtgctgaccaacctgaaggatcacccagatgcatgg
acacgagtcgacaccatcctggagttttctcagaacatgaagactaaatactatgcactg
caaattctggagactgtgatcaaaacacgctggaagattctccccagaaatcaatgtgaa
ggaataaagaagtatgtcgttggtctgattatcaagacctcatctgatgccgcaaatgtc
gagaaagatggagtgtacattgcaaaactcaacatgatcctcgtacagatcctgaagcag
gagtggcccaaacactggcccaccttcatcagtgacatcgtgggtgccagccgcaccagc
gagagcctgtgtcagaacaacatgatcatcctcaagctgctcagcgaggaggtctttgac
ttctccagcggacagatgacccaggtcaaggccaagcacctgaaggacagcatgtgcaat
gaattctcgcaaatattccagctctgccagtttgtcatggaaaactcccagaatngcccc
ctggtccaagccacactcgaaactctcctgcgtttcctgaactggatccccctggggtac
atatttgagaccaaattgatcagcactctggtgtacaagttcttgaacgtgcccatgttc
cgcaacgtgacgctgaagtgtctgacggagatcgccggcgtgagcgtcaaccagtacgag
gagcagtttgtcaacctctttacgctcaccatgtgtcagctcaaacagatgctccccctg
aataccaacatccgcctggcgtattccaacggcaaggacgacgagcagaacttcatccag
aacctcagcctgttcctctgcaccttcctcaaagagcatggacagctcatcgagaagagg
cccaaccttagggagacactcatggaggctctgcactacatgctgctggtgtctgaggtg
gaggagacggagatctttaagatctgtctagagtactggaaccacctggcggccgagctc
tacagggagagccccttctccacctctacctcccccctgctctctgggagccagcacttt
gacgtgcccccccgccggcacctctacctgcccgtgctctcaaaggtgcgtacgctgatg
gtgagccggatggccaagccagaggaggtgctggtggtggagaacgaccagggagaggtg
gtccgagagtttatgaaggacacagactcaatcaacctctataagaacatgagagagaca
ctggtctacctgacccatttagactatgcggacacggagcgcatcatgacggagaagctg
cacaaccaggtgaacgggacagagtggtcgtggaggaacctgaacacgctatgctgggcc
atcggctccatcagcggggccatgcacgaggaggacgagaagaggtttctggtcaccgtc
atcaaggacctgctgggcctctgtgagcagaagagggggaaggacaacaaggccatcatc
gcctcaaacatcatgtacatcgtgggccagtacccacgcttcctccgagcccactggaag
ttcctcaagactgtcgtcaacaagctctttgagttcatgcacgagacccacgacggcgtg
caggacatggcgtgcgacaccttcatcaagatcgcccagaagtgccggcgccactttgtc
caggtgcaggtgggtgaggtgatgcccttcatcgacgagatcctcaacaacatcaacacc
atcatctgtgacctccagccccaacaggtgcacacgttctacgaagcggtgggttacatg
attggggcccagacggaccaggctgtgcaggagcaccttatagagaagtacatgctgcta
cccaaccaggtgtgggacagcatcatccaacaggcaaccaagaatgtggacatcctgaag
gatgcggagacagtgcgtcagctgggcagcatcctgaagaccaacgtgcgggcctgcaag
gccgtgggacaccccttcgtggtgcagctgggacgcatctacctggacatgctcaacgtc
tacaagtgtctgagtgagaacatctcctctgccatccagaccaacggagagatggtgacc
aagcaacccctgatccggagcatgaggacggtgaagagagaaacgctcaagctgatctca
ggttgggtcagccgctctaacgacccacaaatggtgggggagaactttgtcccgcccctg
ctggaggccgtactcatcgactaccagcgcaacgtccccgcagccagagagccagaggtg
ctcagcaccatggcgaccatcgtcaataagctgggcggacacatcaccggggagattccc
aagatcttcgacgccgtcttcgagtgcactttgaacatgatcaataaagactttgaggag
tacccagagcataggacccatttcttctacctcctccaagcggtgaactctcagtgcttc
ccggccttcctctctatacccccggcccagttcaaactggtgctggactccattatctgg
gccttcaaacacaccatgaggaacgttgcagacactggtctgcagattctttacaccctg
ctgcagaacgtggctcaggaggaggctgccgcacagagcttctaccagacctatttctgt
gacatcctccagcacatattttccgtcgtcacagatacctcgcacacagcagggctaacc
atgcacgcgtccatcctggcatacatgttcaacctggtggaggagggtaaaatcagcgcc
gccctcaacccagccagccagaacaaccagggatacgttcaggagtacgtggccaacctg
ctcaagactgccttcccccatctacaagatgcccaggtgaaggtgtttgtaacaggtctg
ttcagcttgaaccaggacatccctgccttcaaggagcacctgagggacttcctggtgcag
atcaaggagtttgctggcgaggacaccacagacctgttcctggaggaacgggagacgtcg
ctgcggcaggcccaggaggagaaacacaaactgcagatgtccgtccccggcatcctcaac
ccccatgaaatcccagaggagatgtgcgactga

DBGET integrated database retrieval system