Coregonus clupeaformis (lake whitefish): 121533180
Help
Entry
121533180 CDS
T08357
Name
(RefSeq) vacuolar protein sorting-associated protein 54
KO
K17600
vacuolar protein sorting-associated protein 54
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cclu01009
]
121533180
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121533180
Protein phosphatases and associated proteins [BR:
cclu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
121533180
Membrane trafficking [BR:
cclu04131
]
Endosome - Golgi transport
Tethering complex
GARP complex
121533180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54
SBP_bac_6
Motif
Other DBs
NCBI-GeneID:
121533180
NCBI-ProteinID:
XP_045061165
LinkDB
All DBs
Position
20:complement(2326651..2336141)
Genome browser
AA seq
565 aa
AA seq
DB search
YGCTNEYDPALCFWLVRLADQMRLMTFPQWFELLKSVFENFILLLKRIKATLSVVRNVVL
EALDSNQKSRLLERAAAGALTEAPGTLLNQGEAELAYLTHEGLFISDALNDAQLHLGASG
GQVESSSVGPRQAQSRMDGCGSDSASGTTESSSSREHAFQPGGGVGISSSEDMMPSDLEL
GRVANNIQELLYTASDVSHDRCVKVLMARAKDGSLERLSSAEFVFLSQAVEGFVRDTEEL
CCRRSVSLRGALQSQANRFVHRFHEERKTKLSLLLDNERWKQAEVPAEFQDLVNSIADGR
ITLPERKPQGTEERKPSDYLHIDGQKYAVVGTVLLLIRIFLEYCQCVNDIPSIATDMLTR
LSDLLKHFNSRSCQLVLGAGALQVVGLKTITTKNLALASRCLQLVVHYIPVIRAHFETKL
TPKQYSVLRHFDHITKDYNDHIAEISAKLVAIMDSLFEKVLSKYEVKAPMPSACFRNVCK
QMAKMHEALYELLPEEQAQMLFLRINASFKMHLKRQLARLGVHHDGGPQHGLVAVDVAFY
TENVQSLRTLEKLDLNMAEIWEQKR
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
tatggttgcactaatgaatacgaccctgctctctgcttctggttggtcaggctggcagac
cagatgcgtctgatgaccttcccccagtggtttgagctgctgaagtccgtctttgagaac
ttcattctcttactgaagaggatcaaggcgacgctgagtgtggtgaggaacgtggtgctg
gaggcgctggacagcaaccagaagagccgtctgctggagcgggctgcagcgggggcccta
accgaggccccagggacccttctcaaccagggggaagcagaactggcctacctcacccac
gagggcctgttcatcagcgacgctctcaatgatgcccagctgcacctgggggcaagcgga
ggccaggtggagagctcctccgtggggcccagacaggcccagtcacgtatggatggttgt
ggtagtgactccgcctcagggaccaccgagtcgtcctccagcagggaacacgctttccag
ccaggagggggcgtcggcatctcgtccagtgaggacatgatgcccagtgacctggagctg
ggccgcgtggccaataacatccaggagctgctctacaccgcctcagacgtcagccacgac
cgctgtgtcaaagtcctcatggccagagccaaggatggctccctggagcggctgagctcg
gcagagtttgtgtttctgtcccaggcggtggaaggctttgtgagggacacggaggagctg
tgctgcagacgcagtgtgtccctaaggggggcgctacagagccaggccaaccgctttgtc
caccgcttccacgaggagcgcaagaccaagctcagcctgctgctggacaatgagcggtgg
aagcaggcagaggttcctgcagaattccaggacctggttaactccatagcagatggcagg
atcacattacccgaacgcaaaccccaaggcacagaagaaaggaaaccaagtgattatttg
cacattgatggccagaaatatgctgttgttgggacggtgttactactgatccggatcttc
ctggagtactgtcagtgtgtcaacgacatcccctccatcgccacagacatgctcacccgc
ctctctgacctactcaagcacttcaactcgcggagctgccagctggtcctgggggcagga
gcactacaagtggtgggactcaagaccatcaccactaaaaacctggccctggcctctcgc
tgtcttcagctggtggttcactacattcccgtcatcagggcccactttgagaccaagctg
acgcccaagcagtacagtgtcctcagacactttgaccacatcactaaggactacaacgat
cacatagcggagatctccgctaaactggtggcaatcatggacagcttgtttgagaaggtg
ctatctaagtatgaagtcaaggcccccatgccttcggcctgctttcggaatgtctgtaaa
caaatggccaaaatgcacgaagccctctacgagctgctacctgaggagcaggcgcagatg
ttgttcctgaggatcaatgcaagctttaaaatgcaccttaagaggcagctggcccgactc
ggggtgcaccacgatggtggacctcaacatgggctggtggcggtggatgtggcattttac
actgagaacgttcagtcactgaggacacttgaaaagctggacttgaacatggctgagatc
tgggagcagaagaggtga
DBGET
integrated database retrieval system
