Coregonus clupeaformis (lake whitefish): 121533266
Help
Entry
121533266 CDS
T08357
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X2
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121533266
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cclu03041
]
121533266
03009 Ribosome biogenesis [BR:
cclu03009
]
121533266
Enzymes [BR:
cclu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121533266
Spliceosome [BR:
cclu03041
]
Complex A
U1 snRNP components
U1 related factors
121533266
Complex B
121533266
Ribosome biogenesis [BR:
cclu03009
]
Eukaryotic type
Pre-60S particles
Helicases
121533266
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
121533266
NCBI-ProteinID:
XP_041695016
LinkDB
All DBs
Position
Unknown
AA seq
490 aa
AA seq
DB search
MPGFSDRDRGRDRGYGGAPRFGGGGGSRGGPPQGKFGNPGERLRKKHWNMDELPKFEKNF
YQEHPDVIRRPPQEVDNYLRSKEVTVKGRDCPKPMMKFHEANFPNYVMDVIAKQGWDEPT
PIQAQGWPLALSGKDMVGIAQTGSGKTLAYLLPAIVHIQHQPFLEHGDGPICLVLAPTRE
LAQQVQQVAAEYGRASRLKSVCVYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTN
LRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKQYV
QINVGALQLSANHNILQIVDVCNDGEKDDKLLRLLEEIMSEKENKTIIFTETKRRCDELT
RRMRRDGWPAMGIHGDKSQQERDWVLNEFKYGKAPILIATDVASRGLDVEDVKFVINYDY
PNSSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQASDLIAVLREANQAINPKLLQMAEAR
GGRGGGKRWL
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgcctggattttccgatagagatcgtggcagagacagggggtatggaggtgcacctcgt
tttggaggcggtggtggcagtaggggcggaccccctcaggggaaatttggcaacccaggc
gaaaggttgcgcaaaaaacactggaacatggatgagctcccaaagtttgagaagaacttc
taccaggagcacccggatgtgatccgcagaccacctcaagaggtggataactaccttaga
agtaaagaagtaacagtgaaaggcagagactgccccaagcccatgatgaagtttcacgag
gccaattttccaaattatgtgatggatgtcattgccaaacaaggatgggatgagccaact
cctatccaggctcagggctggcctctggccctcagtgggaaagacatggtgggcatcgcc
cagacaggctctggcaaaaccctcgcttatctgctgcctgcaatcgtgcacattcaacac
cagccattcttggagcatggagacggacctatatgtttggtgctggccccgacccgtgag
ctggcccagcaggtgcagcaggttgctgccgagtatggcagggcctcccgcctgaagtcc
gtctgtgtctatggtggagcccccaaaggaccccagatccgggacctcgagagaggtgtt
gagatctgtatcgccaccccagggcgtctcattgacttcctggaggctgggaagaccaac
cttcgcaggtgtacctaccttgtgctggatgaggctgaccgtatgctggacatgggcttc
gagccccaaatccgcaaaatcgtggaccaaattagaccggatcgtcagaccctcatgtgg
agtgccacctggcccaaggaggtgcgtcagctggctgaggacttcctgaagcagtacgtc
cagatcaacgtgggcgctctgcagctcagcgccaaccataacatcctgcagatagtggac
gtgtgcaacgacggagagaaggatgacaaactgctccggctgctagaggagatcatgagc
gagaaggagaacaagaccatcatctttaccgagaccaagagacgctgtgatgagctcacc
aggaggatgagacgagatggctggccagcaatgggtatccacggagacaagagccagcag
gagagggactgggttctcaatgaattcaaatatggcaaggcccccatcctcatcgccacc
gacgtggcctcccgtggtctagatgtggaggatgtgaaatttgtcataaattatgactat
cctaactcctctgaggactatatccaccgcattggacgcacggcccgcagtcaaaaaacg
ggcaccgcctacaccttcttcacccccaacaacatgaaacaggccagcgacctcatagct
gtgctccgcgaagccaaccaggctatcaaccccaagctcctccagatggcagaggccaga
ggaggtcgtggaggggggaagaggtggctatag
DBGET
integrated database retrieval system
