Coregonus clupeaformis (lake whitefish): 121533425
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Entry
121533425 CDS
T08357
Name
(RefSeq) transcription factor Sox-2
KO
K16796
transcription factor SOX2 (SOX group B)
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121533425
Transcription factors [BR:
cclu03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
121533425
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
121533425
NCBI-ProteinID:
XP_041695299
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All DBs
Position
20:complement(42233042..42234320)
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AA seq
315 aa
AA seq
DB search
MYNMMETELKPPAPQTNSGGTGNSNSSGNNQKNSPDRVKRPMNAFMVWSRGQRRKMAQEN
PKMHNSEISKRLGAEWKLLSESEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMKKD
KYTLPGGLLAPGGNGMGAGVGVGGSLGGGVNQRMDSYAHMNGWTNGGYGMMQEQLGYGQH
PGLNAHNNAQMQQMHRYDMSALQYNSMTNSQTYMNGSPTYSMSYSQQSTPGMTLGSMGSV
VKSESSSSPPVVTSSSHSRGAPCQTGDLRDMISMYLPGAEVPEQTAQSRLHMSQHYQSAP
VPGTTINGTLPLSHM
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atgtataacatgatggaaactgaactgaaaccccccgcaccccagacaaattctgggggt
actgggaattcaaattcatctggaaacaaccagaaaaacagtccagaccgagtcaagaga
cccatgaatgccttcatggtttggtcgaggggacaacgaagaaagatggcacaggaaaac
cccaaaatgcacaattcggaaataagcaaaagacttggggcggagtggaagcttctatct
gagagcgaaaagcgacctttcattgacgaagcgaagcgtctccgtgctctccacatgaag
gaacatccggattacaaatacagaccccggaggaaaaccaagacgctgatgaagaaggac
aaatacactctgccaggtgggcttcttgcaccgggcggcaatggcatgggcgcgggagtg
ggtgtagggggaagcttgggcggtggggttaatcaaaggatggacagttacgcacatatg
aacggctggaccaatggaggttatggcatgatgcaggagcagcttggctacgggcagcac
cctggtttaaacgctcacaacaacgcgcagatgcagcaaatgcaccgctatgacatgagc
gcacttcagtacaactccatgactaactcccagacctacatgaacggatcacccacgtat
agcatgtcctactcacagcagagcactcctggaatgactctgggctccatgggttcggtg
gtcaagtcagagtccagttccagtccccccgtagtcacgtcgtcgtctcactccaggggt
gctccgtgtcagacaggagacctacgggacatgatcagtatgtacttaccgggcgctgag
gtgccggagcaaactgcccaaagcagactccacatgtcccaacattaccagagcgcacct
gtacccggcacgacgatcaatggcacactcccattatcacatatgtaa
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