Coregonus clupeaformis (lake whitefish): 121533428
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Entry
121533428 CDS
T08357
Symbol
fxr1
Name
(RefSeq) fragile X mental retardation syndrome-related protein 1
KO
K15516
fragile X mental retardation protein
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121533428 (fxr1)
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
121533428 (fxr1)
Factors involved in mRNA localization
Other mRNA localization factors
121533428 (fxr1)
mRNA cycle factors
Stress granule specific factors
121533428 (fxr1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FXMRP1_C_core
FXR_C1
KH_9
Tudor_FRX1
KH_1
Agenet
FXR_C3
KH-I_KHDC4-BBP
Tudor_2
Motif
Other DBs
NCBI-GeneID:
121533428
NCBI-ProteinID:
XP_041695301
LinkDB
All DBs
Position
20:complement(42357528..42371620)
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AA seq
673 aa
AA seq
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MSNMEELTVEVRGSNGAYYKGFVKDVHDDSLTITFENNWQPERQVPFSDVRMPPPADGKK
EIGEGEEVEIFSRANEQEPCGWWLAKVCMMKGDFYVIEYAACDATYNEIVTFERLRPVNV
NKAVSKSSFFKCTVPVPDDLKAACESEQTHKDFKKAVGACRIVYCPETSNLVVLSINEAT
VKRVSLLSDMHLRSIRTKLMLMSRNEEATKHLESTKQLASGFQEEFTVRLDLMGLAIGSH
GSNIQQARKVPGVTAIELDEGSGTFRIYGENEEAVKKARNYLEFLEDSVQIPRNLVGKVI
GKNGKVIQEIVDKSGVVRVRIEGDKDGTQPRQETQGMVPFTFVGTKENIGNVQVLLEYHI
AYLNEVEQLRMERLQIDEQLRQIGMGHRPSSGRPADKDKGYTTDDSVAATAVHTSRSYTG
RGRGRRGPNYTSGYGTNSEQSNASETDSERKDELSDWSLAGEEPERGTRPQRDSRRRAGP
GRGRGPRGRGAGRGAPNTALKDPYGNPYSVLDNTETDQTADTDASDSNLNTNRRRRSRRR
RTDEDTTVIDGMSESDNASLSENGLDDSKAKPQRRNRSSRRRVRPSEERQPVTVADYISR
AESQSRQTNQKELKKNKKELVECIAEHSLSAEANTSNGPSNGSDEPGKASTERAAKIAYQ
GNGDQQPVLNGVS
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgtccaacatggaggaactgacggtggaggtccgtggctccaacggagcttattataag
ggatttgtcaaagatgtccatgacgattcactcactattacctttgagaacaattggcaa
ccagagagacaagttccctttagtgatgttcggatgccacctccagccgacggtaaaaag
gaaatcggggagggagaagaggtggagatcttctcccgggccaatgagcaggagccatgt
ggctggtggcttgccaaagtgtgcatgatgaagggagatttctatgtgatcgagtatgct
gcctgtgacgccacatacaatgaaatagtcacatttgaacgtcttcggcctgtaaatgtc
aacaaggcggtgtcaaagagctccttcttcaagtgcacagtcccagttcctgacgatctg
aaagcagcgtgcgaaagtgaacaaacgcataaagatttcaaaaaggcagtaggagcttgt
cggattgtctactgtccagaaacaagtaacttggttgtactgtccataaatgaagccaca
gttaagcgagtgtctttgctcagtgacatgcacctgagaagcattcgtactaagctcatg
ctcatgtcccgaaatgaggaggccactaaacatctggagagtacaaagcaactggcgtcc
ggtttccaagaggagtttacagtcaggctggacctcatgggccttgccattggaagccat
ggcagcaacattcaacaagccagaaaagtgcctggagtcactgctattgagctggatgag
gggagcgggacgttcagaatttacggagagaatgaggaggcagttaagaaggcaagaaat
tatctggagtttcttgaagattctgttcagatccccaggaacttggtcggcaaggtaatt
ggcaagaacggaaaagtaattcaggagatcgttgacaagtctggagtggtgagagtgagg
attgaaggggacaaggatggcacccagccacgtcaagaaacacagggaatggtcccgttt
acgtttgtcggcactaaggagaacattgggaatgtccaggtacttctggagtaccacatc
gcctacctgaacgaagtggagcagctgcgtatggagagactgcagatagacgagcagctg
aggcagattgggatgggccaccggccttcatctggccgcccagcagacaaggacaagggc
tacaccacagacgacagtgtggctgctaccgccgtgcacaccagccgctcatacaccggc
agaggccgcggacgcaggggccccaactacacctccggctatggcacaaactctgagcaa
tccaatgcctctgagactgactctgaacggaaggatgagctgagtgactggtccctggcg
ggagaggaaccggagagggggacccggccacaaagagacagcaggaggagagctggtcca
gggagggggagagggcccaggggccgcggagcagggagaggagcccccaacactgctctg
aaggatccttatggcaacccatacagtgtgcttgacaacacagagacagaccagacggcc
gacactgatgcaagcgactccaacctaaacacaaaccgccgccgccgctcccgccgccgc
cggactgacgaggacacaacagtcattgatggcatgagcgaatcagataacgcttccctg
agtgagaatggccttgatgactcaaaagctaaaccacaacggcgtaaccgtagcagcaga
cgccgtgtccgcccatcagaggaaaggcaaccagttacagtggcagattacatatcccgt
gctgaatcacaaagcagacagactaaccaaaaggaactgaaaaagaacaaaaaagaactg
gtcgagtgtatcgcggagcacagcctatctgcagaagcaaatacaagcaacggccccagc
aatggaagtgacgaaccaggcaaggcttccacagaacgggctgccaaaatcgcttaccaa
gggaacggtgaccagcagcctgtcctgaacggggtttcctaa
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