Coregonus clupeaformis (lake whitefish): 121533435
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Entry
121533435 CDS
T08357
Symbol
gpc1a
Name
(RefSeq) glypican-1
KO
K08107
glypican 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
cclu00535
]
121533435 (gpc1a)
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
cclu00537
]
121533435 (gpc1a)
Proteoglycans [BR:
cclu00535
]
Cell surface proteoglycans
Glypican family (GPI-anchored HSPG)
121533435 (gpc1a)
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
cclu00537
]
Others
121533435 (gpc1a)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Glypican
Fz
LprI
Motif
Other DBs
NCBI-GeneID:
121533435
NCBI-ProteinID:
XP_041695310
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Position
20:complement(42843548..42896368)
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AA seq
553 aa
AA seq
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MDFLQALLFFFLSAVPLSADNASSKARSCSDVRQFYSGKGFTLNGVPQTEISGEHLRICP
QGYTCCTSAMEETLFNLSRREFEGLVRESGRSLQASLNAHYRSFDTYFTDLLNSSERSLQ
ESFLATLGSLYSKNTPVFQDLYADLRRYYRGSAVNLEETLNEFWARLLERLFKASVLPQY
TLTDDYLECVAKQTETLRPFGDVPRDLKPKVTRAFVAARPFVQGLTFSGEVVRKVSQVPL
SPECIRAMMKLVYCPHCRGLASVKPCANYCRNVMKGCLANQADLDTEWQSLVDTMLQVAS
SFSADPSVDVVIYSLPLRISEAILYMQENTEVFTSKVFQACGIPRVAGTQSSGSEERKTR
VNPDSTAMEYKPSPAAGVRLEMQISDVSSKLREMQQYWVQLPAALCNSKVAAGAAVDKCW
NGMTKARYLPEVMGDGLASQINNPEVEIDITKPDMTIRQQIMQLKIMTNRLRNALNGNDV
DFQDASDDVSGSGSGMCTGESCASSGPRVIVPKTDSTRYYNPPENKKVKGTGTQTHPSIL
LPLLSLATLLLRR
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atggatttcctacaggctcttctattcttttttctatccgctgtcccgttgtcggcggac
aatgcgagcagtaaagcccggagctgttcggatgtccgacagttctacagcgggaaaggc
ttcaccctcaacggggtgccacagacagagatatctggtgagcacctgcggatctgtccc
caggggtacacctgctgtaccagtgccatggaggagaccctgtttaacctcagtcgcagg
gagtttgaggggctggtcagagagtcaggacgctcgctacaggcctccctcaacgcacat
tacaggagcttcgacacgtacttcacagacctcctgaacagctcagagcgttccctccaa
gagtccttcctggccacgctgggctccctctactccaagaacacccctgtgttccaggac
ctgtatgctgacctgcgtcgctactaccgcggttccgctgtcaacctggaggagacgctc
aacgagttctgggcacggctgctggagcgcctgttcaaggcctccgtcctcccgcagtac
accctcactgacgactacctggagtgtgtggccaagcagacggagaccctgcggcctttt
ggggacgtcccccgtgacctcaagcccaaggtcaccagggccttcgtggcggcacggcca
ttcgtccagggcctgaccttcagtggggaggtggtccgcaaagtctcccaggttcctctg
agcccagagtgtatccgtgccatgatgaagcttgtgtactgcccccactgtagaggcttg
gcctccgtcaagccctgtgccaactactgccgaaacgtcatgaagggctgcctcgccaac
caggccgacctggacacagagtggcagagcctcgtcgacaccatgctgcaggtggcgtct
agcttcagtgctgaccccagtgtggacgtggtcatctactccctccccctccgcatctca
gaggccatcctctacatgcaggagaacacagaggtcttcaccagcaaggtgttccaggcc
tgtgggatccccagggtggcaggcacacagagctcagggtctgaggagagaaagaccaga
gtgaaccctgacagcaccgcaatggagtacaaacccagccccgctgcaggggtccgactg
gagatgcagatatctgatgtgtccagtaagctgagggagatgcagcagtactgggtccaa
ctgccagctgctctgtgcaatagtaaagtggcagcaggagcagctgttgacaagtgctgg
aatggcatgaccaaggccaggtatcttcctgaggtgatgggtgacggcctggccagccag
atcaataacccagaggtggaaatcgacatcaccaagccagacatgactatccggcagcag
atcatgcagctgaagatcatgaccaaccggctgaggaacgccctcaacggcaacgacgtg
gacttccaggatgccagtgatgatgtcagtggttcaggaagtggaatgtgtacaggcgag
tcgtgtgccagtagcggacctcgtgtcattgtgcccaaaacagacagcaccagatactac
aatcctcctgagaacaagaaggtgaagggcacaggaacccagactcacccctccatcctc
ctccccctgctctcattggccacactgctgctcaggcgataa
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