KEGG   Coregonus clupeaformis (lake whitefish): 121533445
Entry
121533445         CDS       T08357                                 
Name
(RefSeq) vacuolar protein sorting-associated protein 4B-like
  KO
K12196  vacuolar protein-sorting-associated protein 4
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Pathway
cclu03250  Viral life cycle - HIV-1
cclu03272  Virion - Hepatitis viruses
cclu04144  Endocytosis
cclu04217  Necroptosis
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    121533445
   03272 Virion - Hepatitis viruses
    121533445
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    121533445
  09143 Cell growth and death
   04217 Necroptosis
    121533445
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:cclu04131]
    121533445
   03400 DNA repair and recombination proteins [BR:cclu03400]
    121533445
Membrane trafficking [BR:cclu04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-III complex
    121533445
DNA repair and recombination proteins [BR:cclu03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    121533445
SSDB
Motif
Pfam: AAA Vps4_C MIT AAA_lid_3 AAA_16 TIP49 AAA_5 AAA_14 RuvB_N AAA_22 IstB_IS21 DUF815 AAA_18 AAA_2 nSTAND3 NPHP3_N RNA_helicase AAA_33 AAA_17 AAA_24 AAA_7 PhoH Sigma54_activat Mg_chelatase ResIII Csx12 AAA_28 Parvo_NS1 KAP_NTPase NACHT bpMoxR TEBP_OB2-like Viral_helicase1
Other DBs
NCBI-GeneID: 121533445
NCBI-ProteinID: XP_041695321
LinkDB
Position
20:complement(43116231..43126662)
AA seq 437 aa
MANNLQKAIDLASKAAEEDKAKNYEEALRLYQHSIQYFLHVVKYEAQGDKAKQSIRAKCA
EYLDRAEKLKEYLKKKEKAPPAKPVKESGSDDKGNESDEGEGDQEKKKFQNQLSGAIVME
KPNIKWNDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAV
ATEANNSTFFSISSSDLVSKWLGESEKLVKNLFSLARENKPSIIFIDEIDSLCGSRSENE
SEAARRIKTEFLVQMQGVGNDNDGVLVLGATNIPWTLDSAIRRRFEKRIYIPLPEEHARS
FMFKLHLGSTPSELIESDYVILGKKTNGYSGADISVIVRDALMQPVRKVQSATHFKRVQG
SSWNHPNLVVDDLLTPCSPGDPDAIEMTWMDVNGEKLMEPIVCMADMLRSLHNTKPTVNE
QDLDKLKKFTEDFGQEG
NT seq 1314 nt   +upstreamnt  +downstreamnt
atggctaataatttacagaaagcaatagatcttgcaagcaaggctgcagaggaggacaaa
gcaaaaaactatgaggaagctctccggttgtaccagcattctattcagtacttccttcat
gttgtgaagtatgaggcccagggagacaaggccaagcagagcatcagggcaaagtgtgca
gagtacctggaccgagcagagaagctgaaggaataccttaagaagaaggagaaggctcct
ccagccaagcctgtcaaagagtctgggtctgatgacaaagggaatgagagtgatgaaggt
gaaggtgaccaagagaaaaagaagttccaaaatcaactctctggtgccatcgtcatggaa
aagccaaacatcaagtggaatgacgtagctgggcttgagggtgcaaaagaggcccttaaa
gaagctgtcatcttgcccatcaaattccctcacctcttcacaggaaagcggactccatgg
agagggatcttgctctttggtcctcctggtacaggaaagtcttacctggccaaggctgtg
gccacagaagccaacaactccaccttcttctctatctcctcctctgacctggtgtccaag
tggctgggggaaagtgaaaagttggtgaagaatctgttcagcctggccagggagaacaag
ccctccatcatcttcatcgatgagatagactctctgtgtggctccaggagtgagaacgag
agtgaagcagcccgccgcatcaagactgagttcctggtccagatgcagggtgttggaaat
gacaatgatggagtcctggttctaggagccacaaacatcccctggacattggactctgct
attaggagaaggtttgagaagcggatctacatccctctgcctgaggagcatgcccgctcc
ttcatgttcaagctgcatctaggctccacccccagtgagctaattgaatcagactatgtg
atcctgggtaagaagacaaatggctactctggagctgacatcagcgtcatcgtaagggac
gccctcatgcagccagtcaggaaagtgcagtcggccactcacttcaagcgggtccaagga
tcgtcatggaaccatcccaacctcgtggtagacgacctcctgaccccatgctcaccagga
gatccagacgccatagagatgacctggatggatgttaatggagagaaactcatggagcct
attgtttgcatggctgatatgctgaggtcactgcacaacaccaagccaaccgtgaacgag
caggacttggacaagctcaagaagttcacagaggactttggtcaggaaggctaa

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