Coregonus clupeaformis (lake whitefish): 121533473
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Entry
121533473 CDS
T08357
Name
(RefSeq) neurogenic locus notch homolog protein 2 isoform X1
KO
K20994
Notch 2
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
121533473
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF
hEGF
EGF_TEN
EGF_CA
Ank_2
EGF_2
Ank
Notch
NOD
Ank_5
Ank_3
NODP
Ank_4
EGF_3
EGF_Teneurin
EGF_DL_JAG
JAG1-like_EGF2
EGF_MSP1_1
Motif
Other DBs
NCBI-GeneID:
121533473
NCBI-ProteinID:
XP_041695372
LinkDB
All DBs
Position
20:complement(44140957..44199034)
Genome browser
AA seq
2488 aa
AA seq
DB search
MGQLPGFASGKVLVFFVCCIRLSLALQCLDAVKPCVNNATCVTFTNGTGYCRCAAGFLGE
YCHHKDPCHPGYCLNGGNCSVAMSGIPGSPTCSCPLGYTGQHCQSPQNSTCYPNNPCANR
GVCTLLSLDKYKCQCAHGWTGIRCERVDSCLSGPCANGGTCRSLSGAKFSCTCPPGYWGP
RCLNDTDECAASTPVCQNEGVCVNTPGSYRCNCAPGFTGRHCETPYIPCSPSPCLNGGTC
RPTSETSYWCHCLPGFNGTNCDNNIDDCPDHHCQNGGTCMDGVNTYNCKCPPEWTGQSCT
EDVDECRLQPNTCQNGGTCSNIQGSYTCVCVNGWSGLDCSENIDDCATAACTKGSTCIDR
VASFLCVCPYGKTGLLCHVNDACISSPCRDGAQCDTNPINGMFNCNCAPGYKGSTCNDDI
NECIIGFPSGPNPCEHGGLCVNTDGSFTCNCARGYGGPRCETDINECVSSPCQNDGTCLD
RIGDYSCICMEGFEGTHCEIDINECASSPCLNQGICLDQVKRYVCQCPLGFSGEMCQIDI
DECSSTPCLNGAKCIDRPNGYECECAEGFYGPLCKENIDDCDPEPCHHGVCHDGIATFSC
DCDPGYTGSICNIQVMECHSNPCQNRGRCIDLVNKYQCNCLPGTSGVNCEINVDDCASNP
CEYGECQDGINEYKCVCAPGYTGAKCDVDINECNSSPCMSGGTCVDKVNGFICQCPPGTH
GPLCHSGTDHCAPRPCVHGEQQSGYHCECESGWVGQHCDQEKDECQSSPCQHSGTCVDRL
NGYSCQCRPGFTGVNCEVNIEECASSPCENHGTCVDGINSYTCQCAPPYSGKHCEEELVP
CASHPCERGGVCQPTPDYTFYTCRCPSGWQGPRCTEDVDECRKSPCQNRARCINNQGSYV
CKCQPGYSGLNCQTNIDDCSPNPCLNGGSCVDGVGGFSCDCRPGFDGERCETEVDECASQ
PCRNGAVCRDYVNSFVCECRPGFDGILCEHNIPECTESSCLNNGTCVDDINTFSCRCRPG
FYGTFCQYEQNECDSQPCKNGGTCTDGLGSYRCTCPVGYNGQNCQNFVNLCSQPLCRNGG
SCSQSETTWSCHCPVGWTGLYCDVPNMSCQDYAARNGIPVEMVCKYMGRCVNVGNAHKCQ
CQPGYTGSYCDKTVDECQSNPCRNGATCMDYQGTYECMCKAGYQGVNCEYDVDECHSNPC
RHGGTCINLINRFSCACPPGTHGVQCEVNVDDCAPKPGSLGPRCLNGGQCVDGVGRYTCS
CPPGFAGEHCEGDVNECLSGPCHSPGSLDCVQLANDYQCRCRLGYTGRLCESMVDLCQSK
PCHNSGTCSMNMSSVHGYTCTCQPSFTGFNCGEVEGYNCAQLRCQNGGHCQDSQGDHLHC
RCQPGFSGSRCETAHSCQNRPCLNGGTCMKDPHQYSCHCPAHFSGRHCENVIFDQSPRTP
SCPYVECEQRSGDTKCDPQCNNHECQWDGGDCSLHWHRPWVNCTAPVPCWELFRNGRCDP
ECDNSGCLFDSFECQESTKSYCKYDKYCADHYANKICDKSCNTEACGWDGLDCSEDTPAK
VADGTLVIIVLLQPEELLGDLRGFLRSLGTLLHTNLRVKMDAQQRPMVYPYYTLEHDNDN
EGQSATMKRRGKREMDKEVLGSKVYLEIDNRKCAEISMDCFSSTELVASFIAAEYLKSAL
PYPVVSVDSDPMDPQKPPFMLYLAMGAAVIILLILVLGVLAAKRKRKHGILWLPDGFLAK
KDDKRREPLGQDDFGMKNFKTQDGGMMDGGQSQRWMEEEAPPKKPRTEDKPLLPLGVDGG
VDRREWTLQHHKAADISLTPPQADLEADCLDVNVKGPDGFTPLMLASLRNGGASDCGLQA
EEEEESGGDEPGPNVISDLITQGATLMAQTDRTGETALHLAARYARADAAKRLLDAGADA
NAHDNMGRTPLHAAVAADAQGVFQILIRNRATELDARMNDGTTPLILAARLAVEGIVEEL
VHCHADINAVDDHGKSALHWAAAVNNVEATLVLLKNGANRDMQDNKEETPLFLAAREGSF
EAAQVLLDHYSNRDITDHLDRLPRDTAQERMHHDIVRLLDQYNLVHSPHNGPNHMGGGGG
HSLVCGGNGAGYMGMRPGPQGKKSRRGGGKVGGAGGGTAKELKDMKAKRRKKPTGGEGPA
VGAVGGASGNGTKAAGGLSESSVTMSPVDSLESPHSYTGDAARAPNTANSPPLLSSPSSR
PLLPPVSHMLGQQQSWVGLKHGYGGHMFSLLPQQIGNGHPGMSQHHGQGLLTPMNVTMSR
EQLPPIVTFQMMAPGGGQALLKQPQPGQVQSQGQNQGQPHSQQGPTHLHCTQGMMYQMPD
VGLQHSLSHSLPHSHGLAHGHGMVQDGQSRQQLPPYQAIQSPVDKYPTPPSQHSYATAGS
EGTTPGHPAHPPSKHPYLTPSPESPDPWSSSSPHSNSDWSDVTTSPTPLGNPHALPPPRH
THIPEQPQSQQTQQNPQQPQRGNMQVFA
NT seq
7467 nt
NT seq
+upstream
nt +downstream
nt
atgggccaattacccggttttgcttcgggcaaagtattggttttcttcgtctgctgcatt
cggctttctttggctcttcagtgtctggatgctgttaagccatgtgtgaacaatgctacg
tgtgtcaccttcaccaatggcacaggatactgcaggtgtgccgcaggcttcctgggtgag
tactgccatcacaaagacccgtgtcaccctggttactgtctgaatggagggaactgctca
gtggctatgtcgggcatcccgggcagccccacctgctcctgtcccctgggctacaccggg
cagcactgtcagagcccccagaactccacctgctaccccaacaacccctgtgccaacaga
ggagtatgcaccctgctttccctcgacaagtacaagtgccagtgtgcccacggatggaca
ggcatacgatgtgagcgtgtggatagctgtctgtcaggaccttgtgctaacggaggcacc
tgcagatccctgtccggggccaagttcagctgtacctgtcctccaggctactggggtcca
cgctgcctcaacgacactgacgagtgtgctgcctccaccccggtgtgtcagaacgaaggg
gtgtgtgtcaacacccccggctcctacaggtgtaactgtgcccccgggttcaccggccgc
cactgtgagaccccctacatcccctgctccccctcgccctgcctcaatgggggcacgtgt
cgcccaacctctgagaccagctactggtgccactgcctgccaggcttcaatgggactaac
tgtgacaacaacattgacgactgccccgaccatcactgccaaaatggagggacctgcatg
gatggtgtcaatacctacaattgcaaatgccccccggaatggactggtcagtcctgtaca
gaggatgtggatgagtgtcgcctgcagcccaacacgtgtcagaacgggggtacctgcagc
aatatccagggcagctacacctgtgtgtgtgtcaatggctggagtggcctggactgctct
gagaacatagatgactgtgctacggctgcctgcaccaagggctccacctgtattgaccgt
gttgcatccttcctctgtgtctgcccctatggaaagacaggtttgctgtgccacgtgaat
gatgcctgcatcagtagcccgtgccgggatggggcgcagtgcgacaccaaccctatcaat
ggcatgttcaactgcaactgtgccccaggctacaaggggagcacctgcaatgacgacatc
aacgagtgcatcattggtttcccctcaggtccaaacccctgtgagcacggaggattgtgt
gtgaacacggatggctcgttcacatgtaactgtgcaagaggttatggtgggccgcgctgt
gagacggacatcaatgagtgtgtctccagcccctgccagaacgacggcacctgtctggac
cgcataggagactacagctgcatctgtatggaaggatttgagggaacacactgtgagatt
gacatcaatgagtgtgccagctctccatgtctgaaccaagggatctgtctggatcaagtc
aaacgttacgtctgccagtgccctctaggattcagtggggagatgtgtcagatcgacatt
gacgagtgttccagcacaccctgcctcaacggggccaagtgtatcgaccgacccaacggt
tacgagtgtgaatgtgctgaaggcttctatgggccactgtgtaaagagaacatagatgac
tgtgacccagagccctgccaccatggtgtgtgtcatgatggcatcgccaccttctcctgt
gactgcgacccaggctacaccggctccatttgcaacatccaggttatggagtgccacagc
aacccctgccagaaccgcggacggtgcatcgacctggtcaacaagtaccagtgcaactgt
ctgcctggcacctcaggggtgaactgtgagatcaatgttgatgactgtgccagtaacccc
tgtgagtatggggagtgccaggatgggatcaacgagtacaagtgtgtctgtgctccagga
tacacaggtgcaaaatgtgacgtggacatcaatgagtgtaattccagcccgtgtatgagt
gggggtacatgtgtggacaaggtgaacggcttcatctgccagtgcccccctggcacccat
ggccccctgtgccactctggcaccgaccactgtgctccccggccctgtgtacacggagag
cagcagagcgggtaccactgtgagtgtgagtctggctgggtggggcagcactgtgaccag
gagaaggatgagtgccagtccagcccctgccagcacagtggcacctgtgtggacagactc
aatggatactcctgccagtgtcgccccggattcacaggtgtgaactgtgaggtcaacata
gaggagtgtgcatcaagcccatgtgagaaccatggtacctgtgtggacggaatcaacagt
tacacctgccagtgtgcccctccgtactcaggaaaacactgtgaggaggagttggttccc
tgtgcgtctcatccatgtgagcggggaggtgtgtgtcagccaaccccagactacaccttt
tacacctgtagatgtcccagtggctggcaaggcccccgctgcactgaggatgtggatgaa
tgcagaaagagcccgtgtcagaacagggcccgttgcatcaacaaccagggcagctacgtg
tgcaagtgtcaaccaggctacagcggcctcaactgccagaccaacatcgatgactgctcc
cccaacccgtgtctgaacggcggttcctgtgtggatggagtgggagggttctcctgtgac
tgccggccagggtttgatggggagcgctgtgagacagaggtggacgagtgtgccagccag
ccttgccggaacggagccgtgtgccgggactacgtaaacagcttcgtctgcgagtgccgg
ccaggctttgacggaatcctatgtgaacacaacatcccagaatgcactgagagttcctgt
ctgaataacgggacctgtgttgacgacatcaacaccttctcgtgtcgttgtcgtcctggt
ttctacgggaccttctgtcagtatgagcagaatgagtgtgactctcagccctgtaagaac
ggagggacctgcacagacggcctgggatcctaccgctgcacctgccctgtgggctacaac
gggcagaactgccagaactttgtgaacttgtgtagccagccactgtgcaggaacggaggg
tcctgttcccagtcagagaccacctggtcatgtcactgtcctgtgggctggactggtcta
tactgtgacgtccccaacatgtcctgtcaggactatgctgctcggaatggtattccagtg
gagatggtgtgtaagtacatgggtcgctgtgtgaatgttggaaatgcccacaagtgtcag
tgccagcctggctacactggcagctactgtgacaagactgtggacgagtgccagtccaac
ccctgccgcaacggagccacctgcatggactaccagggcacatatgagtgtatgtgcaag
gctggctaccagggggtgaactgtgagtatgacgtggatgagtgtcactctaacccttgt
cgtcatggaggaacctgcatcaacctcatcaaccgcttctcctgcgcctgcccacctggc
acacatggtgttcagtgtgaggtgaacgtggacgactgtgctcccaagcctggctccttg
gggcctcgctgtctgaacgggggccagtgtgtggatggggtgggccgctacacctgctcc
tgcccccctggcttcgctggggagcactgtgagggggacgtcaatgagtgtctctctgga
ccctgtcactctcctggtagcctggactgtgtgcagctggccaacgactaccagtgccgc
tgtcgcctgggctacacaggacgactctgtgagtccatggtggatctgtgccagtctaag
ccgtgccataacagtggtacctgctccatgaacatgagctcagtgcatggatacacatgc
acctgtcaaccaagtttcactggcttcaactgtggagaggtagagggctacaactgtgcc
cagctgcgttgccagaacggcgggcactgccaggattctcagggtgatcatctgcactgc
cgttgccagccaggcttcagtgggtcacgctgcgagaccgcccacagctgccagaaccgg
ccctgtctgaatggaggcacctgtatgaaggacccacaccagtacagctgtcactgccca
gcccacttctccggcaggcactgtgagaatgtcattttcgaccagtccccccgcaccccc
tcctgcccttatgtagagtgtgagcagcggtccggggatacgaagtgtgacccgcagtgc
aacaaccatgagtgccagtgggacggcggggactgttctctacattggcaccggccatgg
gtcaactgcaccgcccccgtgccctgctgggagctgttccgcaacggccgctgtgacccg
gagtgtgacaactccggctgcctcttcgacagctttgagtgtcaagagagcacaaagtca
tactgcaagtatgataagtactgtgcggaccactatgcaaacaagatctgtgacaagagc
tgtaacacagaggcatgtggctgggacggcctggactgctctgaggacacccctgctaag
gtggctgatggcacactggtgatcatagtgttactgcagcctgaggagctgctgggagac
ttgagaggcttcctgcgctccctgggaaccctgctgcacaccaacctccgtgtcaaaatg
gacgcccagcagagacctatggtgtatccttactatactctggagcacgacaacgacaat
gaaggacagtctgctacaatgaaacgtagaggcaaacgggagatggacaaggaggttctc
gggtctaaggtgtacctggagattgataaccgaaagtgtgctgagatctccatggactgt
ttctccagcacagagctggttgcatccttcatcgctgcagagtacctaaagtctgcgctg
ccctaccctgtggtctctgtcgacagtgaccctatggacccccagaagccccccttcatg
ctgtacctggctatgggagcagctgtcatcatcctgctcatcctggtgctgggcgtgctg
gccgccaagaggaaacgcaaacacggcatcctctggctccccgatggcttcctggccaag
aaagacgacaagaggagagagcccctgggccaggacgacttcggcatgaagaacttcaag
acccaggatggagggatgatggacggaggccagagccagagatggatggaagaggaggct
ccgcccaagaaaccaaggactgaggacaagcccctactgcctctgggtgtggatggagga
gtggacagacgggagtggaccttacaacaccacaaggctgctgacatctctctcactcca
ccacaggctgatctggaagcggactgcctggatgtcaatgtcaaaggaccagatggcttc
acccccttgatgctggcttctctacgaaacggaggggcgtctgattgcggcctgcaggcg
gaagaggaagaggagagcgggggagatgagccaggacccaacgtcatctcagacctcatc
acccagggtgcaacactcatggcccaaacggatcgcaccggggagacggcactccacctg
gcggctcgctacgcccgggccgatgccgccaaaaggctgctggacgccggggcagatgcc
aatgctcacgacaacatgggtcgcacccctctccacgctgctgtggcggccgatgcccag
ggagtgttccagatcctgatccgtaaccgggccactgagttggatgccaggatgaacgat
ggcaccacacctctaatcctggctgccaggctggctgtggagggcatagtggaggaactg
gtgcactgccacgcggacatcaatgctgtcgacgaccacggtaagtctgctctgcactgg
gcagctgctgtgaacaatgtggaggccaccctggtgctgctgaagaatggagccaacaga
gacatgcaggacaacaaggaggagaccccgttgttcctggcagccagagagggtagtttt
gaggcggcccaggttctgctggaccactactctaatagggacatcacagaccacctggac
cggctgccccgtgacaccgcacaggagcgcatgcaccacgacattgtacgtctgctcgat
cagtacaacctggtccacagcccacacaacggccccaaccacatgggcgggggaggggga
cactccctggtttgtggaggaaacggagcgggctacatgggcatgcggcccgggccccag
ggcaagaagagcaggcggggcggggggaaggttggaggtgctggcgggggtacagccaaa
gagctgaaagacatgaaggctaagcggaggaagaagccaacaggaggagaagggcctgca
gtgggagctgtgggaggagccagtggcaatggcactaaagctgcaggagggctgtcagag
agctcagtcaccatgtcacctgtggactccctggagtctccacactcgtacacaggagac
gctgccagggcccccaacacggccaactctcctcctctcctgagcagcccctcctccagg
cccctgctgcctccagtcagccacatgctgggccaacagcagagctgggtgggcctgaag
catggatacggtggccacatgttcagcctcctcccccagcagattggtaacggccatcct
ggcatgtcccagcaccacggccaaggcctgctcacccccatgaatgtcaccatgagccgc
gagcagctgcctcccattgtcaccttccagatgatggcaccggggggcgggcaggccctg
ctgaagcagccccagcctgggcaggtgcagtcacaggggcaaaaccagggccagccccac
tctcagcagggccctactcacctgcactgcacccagggcatgatgtaccagatgcccgac
gtgggcctccagcacagcctgtcccacagcctcccccactctcacggcctggcccacggc
catggcatggtgcaggacggccagtcccgccagcagctccctccatatcaggctatccag
agccccgtggataagtaccccacccctccctctcagcacagctacgccaccgctggctcg
gagggcaccaccccggggcacccggctcacccgcccagcaagcacccgtacctcaccccc
tcccccgagtcccctgacccctggtcctcctcctccccccactccaactcagactggtct
gatgtcaccaccagccccacccccctggggaacccccatgcactgccgcctccccgccac
acacatattccggagcagccgcagtcccagcagacgcaacagaacccccagcagcctcag
cgtggcaacatgcaggtgtttgcatag
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