Coregonus clupeaformis (lake whitefish): 121533523
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Entry
121533523 CDS
T08357
Symbol
lingo3a
Name
(RefSeq) leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 3a
KO
K23533
leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121533523 (lingo3a)
Membrane trafficking [BR:
cclu04131
]
Endocytosis
Lipid raft mediated endocytosis
RhoA-dependent endocytosis
121533523 (lingo3a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
Ig_3
LRR_1
ig
Ig_2
LRR_LRWD1
LRRNT
Cupin_1
V-set
LRR_9
LRR_6
Ig_C17orf99
Motif
Other DBs
NCBI-GeneID:
121533523
NCBI-ProteinID:
XP_041695475
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All DBs
Position
20:46189798..46225418
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AA seq
606 aa
AA seq
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MVAGPGLGWPGLLLLLMTTVASTQSQGCPQRCECKAKLKSVACQGKRLSALPDGISSDTR
LLDMSGNMLRWVEHGDLLSYPRLEELDLSENIISVLEPNAFSSLQNLRVLSLKGNQLKLI
PMGAFSHLTNLTTLDLSGNKIVILLDFTFQDLKSLRNLEVGDNDLVYISNKAFLGLVGLR
ELTIERCNLTSISSQSLSYLRGLVTLHLRYLSISSLEDQNFRKLGGLRGLEIDHWPFLEH
ISPHSLQGLNLSWLSITNTNITSVPTAALRSLAHLTSLNLSYNPISVLESWALRDLVRLK
ELHLVNTNLMTVQPYALGGLRQIRLLNLSTNALVTLEEGAFQSVNTLETLRVDGNPLSCD
CRLLWILQRRKTLNFEGKSPVCAGPMEVQGRALSAFSDSALFDHFTCQKPKIRNRKLQPV
TAREGQVVSFLCRAEGEPTPIIFWVSPQRRRITTKSTGRVIVLPDGTLEIRYAQVTDSGT
YICIASNAGGNATYFATLTVSALPLDAALMANRTYYTGDLNETNLNDTKVFLKFTLDLKT
ILISTAMGCCLFLGVVVFCFLMLFAWSRGRGQHKNNFSVEYSFRKVDGPAASGGQGGARK
FNMKMI
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atggtggccggtccaggcctggggtggcctggcctgctcctgctgctgatgactactgtg
gcctccactcagagccaaggctgtccccagcgctgtgagtgcaaggccaagctcaagtct
gtggcctgccaaggcaagcgcctgtctgccctccccgatggcatctcctcggacacacgc
ctgctggacatgagtgggaacatgcttcgctgggtggagcatggtgacctcctctcctac
cctcggctggaggagctagaccttagtgagaacatcatcagtgtcctggagcccaacgcc
ttctccagcttgcagaacctgagggtgctgtcgctgaaggggaaccagctcaaacttatc
cccatgggcgccttctcacacctcaccaacctcaccacactagacctgagtgggaacaag
atcgtcatcctgttggacttcaccttccaggacctgaagagcctgaggaacctggaggtt
ggcgacaacgacctggtctacatctccaacaaggcattcctgggcctggtggggctgagg
gagctcaccattgagaggtgtaacctgacctccatctccagccagtctctctcctacctc
cgcggcctggtcactctgcacctgcgctacctcagcatctcctccctggaggaccagaac
ttccgtaagctgggtgggctgcggggtctagagatcgaccactggcccttcctggaacac
atctccccccacagcctccagggcctcaacctgtcttggctgtccatcaccaacaccaac
atcacctccgtgcccacagccgccctgcgcagcctggcccacctcaccagcctcaatctc
tcctacaatcccatctcagttctggagtcctgggcccttagggacctggtccggctgaag
gagctgcacctggtcaacaccaacctgatgacggtgcagccgtacgcccttggcggcctt
cggcagatccgcctgctcaacctgtccactaatgccctggtaaccctggaggagggcgcc
ttccagtctgtcaacaccctggagacgttgcgtgtagatgggaaccctctatcctgtgac
tgccgcctgctttggatcctccagcgcaggaagaccctcaactttgaagggaagtctcca
gtgtgtgcgggccccatggaggtgcagggcagggccctcagcgccttctcagactctgcc
ctcttcgaccactttacctgccagaagcccaagatacgcaacaggaagctgcagccggtg
actgccagggagggccaggtagtgtcctttttgtgccgggcagagggagagcccacacct
ataatcttctgggtatctccccagcgccgtcggatcactaccaagagcactggacgtgtc
atcgtcctacccgatggaacactggagatccgctacgcccaggtgaccgacagcggcacc
tacatctgcatcgccagcaatgccgggggtaacgccacctactttgccacgctgaccgtg
agcgcgctgcctctggacgcggcgctcatggccaaccgcacatactacacaggtgacctc
aacgagaccaatctgaacgacaccaaggtcttcctcaagttcaccttggacctcaagaca
atcctgatatccacagccatggggtgttgcttgttccttggggtggtggtcttctgtttc
ctgatgctgttcgcatggagccggggccgggggcagcacaagaataacttctcagtagag
tactccttcagaaaggtggatggccctgctgccagtggtggacagggaggggcccgcaag
ttcaacatgaagatgatttga
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