Coregonus clupeaformis (lake whitefish): 121533577
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Entry
121533577 CDS
T08357
Name
(RefSeq) protein strawberry notch homolog 2-like isoform X1
KO
K26273
protein strawberry notch
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cclu03036
]
121533577
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
121533577
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_34
Helicase_C_4
SBNO
ResIII
Motif
Other DBs
NCBI-GeneID:
121533577
NCBI-ProteinID:
XP_041695578
LinkDB
All DBs
Position
20:48642861..48763771
Genome browser
AA seq
1533 aa
AA seq
DB search
MPTLPSPSLAMDGENYLHPEGPQLDSSMFEVASSNMESSMYPSASWGSFSQQSEGYSAHC
PMQSGNQQYHLNATMPDMHIDMFSHSGFHDDFPSLSLPRNGDFPQDLSCIDDLSNNSLFS
SPADSLSEYADAQAFIHADNLAHVPTLWDINTPAQSQLVLNANRFQGLSSLEDISAIIST
PPLGGYQAQRTQTPAEEEAEEEEEETEELGHVDTYADYKPSKSTIGISHPDIVVETNTLS
SVPPPDITYTLSIADSTIKRGLLSALQLEAIIYACQQHEVILQNNQRAGFLIGDGAGVGK
GRTVAGIILENYLKGRKKALWFSVSNDLKYDAERDLKDIEAPTIPVHALNKIKYGDTATS
EGVLFATYSALIGESQAGGQHRTRLKQILDWCKPGFDGVIVFDECHKAKNATSTKMGKAV
LDLQHKLPLARVVYASATGASEPKNMIYMSRLGIWGDGTPFKTFDDFLHAIEKRGVGAME
IVAMDMKVSGMYIARQLSFSGVSFRIEEIGLDDDFKLVYNKSAKLWAEALAVFMCAADEL
RLVSRKSLWGQFWSSHQRFFKYLCIAAKVRCLVELAKKELKAGKCIVIGLQSTGEARTRE
VLDENDGHLDRFVSAAEGVFKALVQKHFPSEKPRREKAPGNKRKRKPRGRQPKFPKHTMV
DPGGVINISDDSSTDTDGMDTDSNSSPDSLLDNNNDDDVIFVNTRIEEMKQGLLNKIADL
GKELPLNTLDELIDKFGGPEMVSEMTGRKGRVVRRPDGSVRYESRAEQSHTIDHINLKEK
DRFMCGEKLVAIISEAASSGISLQADKRVKNQCRRVHMTLELPWSADRAIQQFGRTHRSN
QVTAPEYIFLISELAGERRFASIVAKRLESLGALTHGDRRATESRDLSKYNFENKYGTKA
LDKITKAILGHIESKVSPPKGYPGGDALFFRDMKHGMMDVGIFCKEPRFGLSTEKDCSIT
KFLNRILGLEVHKQNSLFQYFTDNFDYLIEKDKKEGKYDMGILDLAPGNDEIYEEKQETF
MTVGNPQDGQVVLYKISVDRGMPWEEAYEKAQNLNSPDEGFYLSHKLRGNHPCVLLAEQG
RGRNFIVYKPNIGKQAHPESLDNLQLRYRKVTPDQAKDSWESQFNFSFGKCSHANWNGKC
KKIEEGQECLQGMRLRQYHMLCGALLRVWKRVADVVSDITSSSILQIVRLKTKNSNKQVG
IKIPENCVARVRVELLKMDEEVKRRRKEREQHAQEQRLAQERQLKQQLQDKHLLAKLHSQ
PQSLSQSLPVKPLLQPKPPQLKPQPSLVNLLPSMSSLFSHFPHHFPSLPPMQTAPTSTTK
PSRVGEEVLDLTVSSSPSPDSTEGGLGLVSLTGGSMGSFGEAFGLESLISRSALTAQNTA
HILQQPLQPPLIKQRQLQSPQQIQPQLQQWSDRPLINSAHQDYYILNLMDHPDSLPYSLS
SQTATNPSSSSTSSSSSNTVAHVMSGHLSSPSTPSSLFSSALAPSEQQPLPLANSHCSTD
TLINAREVLDNMMRTSADRQTVIQYQPNEWDSA
NT seq
4602 nt
NT seq
+upstream
nt +downstream
nt
atgcccaccctcccgtcaccctcactggccatggacggggagaactacctgcacccagaa
gggccgcagctggacagcagcatgttcgaagtggcctcttccaatatggagagttctatg
tatccctctgcttcctggggatcattctcacagcagtctgaaggatacagcgcacactgc
cctatgcaatctggaaaccagcaataccacttgaatgccaccatgccggatatgcacatc
gacatgttcagccattctgggtttcatgacgatttcccctccctcagcctccccagaaac
ggagacttccctcaggacctgtcctgcatcgatgacctctccaacaactctctgttctcc
tctccggccgactctctgtcagagtacgccgatgcccaggccttcatccatgcagacaac
ctggcccatgtgcccacgttatgggacataaacacaccagcacagagccagctggtgcta
aatgccaacaggtttcagggtttgagcagtttggaggatatctctgccattatcagcacc
ccacctttgggaggataccaggctcagagaacccagaccccggcagaagaggaggcagag
gaggaggaggaggagacagaggagctgggacatgtagacacctacgccgactacaaacca
tccaaatccaccatagggatctcccacccagacatagtggtggagaccaacacgctgtcc
agcgtccctcctcctgacatcacctacactctgtccattgctgactccaccatcaaacgt
ggcctgctctccgccctgcagctagaggccatcatctacgcctgccagcaacatgaggtg
atccttcagaacaaccagagagcaggcttcctgataggagatggggccggagtggggaag
ggccgtacggtggctggcatcatcctggagaattacctaaaaggaaggaagaaagcacta
tggttcagtgtgtccaatgacctgaaatatgacgccgagagagatctcaaagacatagaa
gctcccactattcctgtgcatgccttaaacaagataaagtatggagacacagctacctca
gaaggagtcctgtttgcgacatactctgctctgatcggggagagtcaagcaggagggcag
caccgcaccagactcaagcagatcctggactggtgcaagcccggctttgacggagtcatt
gtgtttgacgaatgccacaaggccaagaatgccacgtccaccaagatgggcaaggccgtg
ctggacctgcagcacaagctgcccctggccagggtggtttacgccagtgccacaggtgcc
tctgagccaaagaacatgatttatatgagccgcctggggatctggggcgacggcacgccc
ttcaagacctttgatgatttcctgcacgccatcgagaagaggggtgtgggcgccatggag
attgttgccatggacatgaaggtgagcgggatgtacatcgcccggcagctgagcttctca
ggggtgtccttccgcatcgaggagatcggcctggacgacgacttcaaactggtctacaac
aaatctgccaaactgtgggcggaggctctggccgtgttcatgtgtgcggcggatgagctg
cgtcttgtcagcaggaagtccctgtggggtcagttctggtcgtctcaccagcgcttcttc
aaatacctctgcatcgccgccaaggttcgctgcctggtggagctggccaagaaggagctg
aaggctggcaagtgcattgtgattggtctgcagtctacaggagaggcccgaaccagagag
gtcctggatgagaacgatggacacctggatagatttgtatccgcagcagagggggtgttc
aaagctctggtacagaaacactttccctccgaaaagccgaggagagagaaagcgcctgga
aacaagagaaaacgtaagcccaggggccggcagcccaagttcccaaagcacaccatggtg
gatccggggggtgtaatcaacatcagtgacgacagcagcacggacacggacggcatggac
accgactccaactcctcgcccgactccctgctggacaacaacaacgacgacgacgtcatc
ttcgtcaacaccaggatagaagagatgaagcagggcctcctgaacaagatcgctgacctg
gggaaggaactacctctgaacactctggacgaactcatcgacaagtttggaggtccagag
atggtctcggagatgacgggtcgtaagggccgtgtggtgcgacgtcctgacgggagcgtg
cgttacgagtcgcgtgcggagcagagccataccatcgaccacatcaacctcaaggagaag
gaccgtttcatgtgcggagagaagctggtggccatcatctcggaggcggccagctcgggc
atctccctgcaggcagacaagcgggtgaagaaccagtgtcggagggtccacatgacactg
gagctgccctggagcgcagacagagccatccagcagtttggtcgtacccatcgctccaac
caggtgacggctccagagtacatcttcctcatctctgagctggccggggagagacgcttt
gcctccatcgtggccaagagactggagagcctgggtgcattgacccacggtgacaggaga
gccacagagtccagagacctgagcaaatacaactttgaaaacaagtatggtaccaaggct
ctggataagatcaccaaagccatcctgggtcacatcgagagcaaggtgtcccctcccaaa
ggctaccccgggggcgatgcgctgttcttcagagacatgaagcatggcatgatggacgtg
ggcatcttctgcaaggagcctcgctttggtctcagtactgagaaagactgcagcatcacc
aagttcctcaacaggatcctgggcctggaggtccacaagcagaactctctgttccagtac
ttcactgacaactttgactacctgatcgagaaggacaagaaggagggcaaatacgacatg
ggcatcttagatctggccccaggtaacgatgaaatctatgaggaaaagcaggagaccttc
atgacagtgggtaatccccaggacggacaggttgtgctctacaagatcagcgtggataga
gggatgccctgggaggaggcctacgagaaggcccagaacctcaacagtcctgacgagggc
ttctacctctcccacaagttgcgggggaaccacccatgtgtgctgctggcggagcagggc
cgagggaggaacttcatcgtctacaagcccaacatcggcaagcaggcccaccccgagagc
ctggacaacctgcagctacgctaccgcaaggtgaccccagaccaagccaaggacagctgg
gagagccagttcaacttctcctttgggaaatgtagccatgctaactggaacgggaagtgt
aagaagatcgaggagggtcaggagtgtctgcagggcatgcgtctgcgccagtaccacatg
ctgtgcggggcgctgctgcgcgtctggaagcgcgtggctgacgtggtctctgacatcacc
agctccagcatcctgcagatcgtacgcctcaaaaccaaaaatagtaacaaacaagttggt
atcaagatcccagagaactgcgtggcccgtgtgcgggtggagcttctcaaaatggacgag
gaggtaaagaggaggcgcaaggagagggagcagcatgcccaggagcagaggctagcccag
gagcggcagctcaaacagcagcttcaggacaaacacctgctggccaagctccacagccag
ccccagagcctgtctcagtctttaccggtcaagcctctactacagcccaaacctccacag
ctcaaaccccagcccagcctggtcaacctgctccccagcatgtccagcctcttctcccac
ttcccccaccacttcccctccctgcccccaatgcagaccgcccccacctccaccaccaag
ccctcccgggtcggggaggaggtgctggacctgacggtgagctcctctccctccccagac
agcacagagggaggcctgggcctggtcagcctaacggggggctccatggggagcttcgga
gaggcctttggcctggagtctctgatatcgcggagcgcactcaccgcccagaacactgca
cacattctgcagcaacctctacagccaccgctcattaaacagcggcagctacagtcgcca
cagcagatacaaccacagctacagcagtggtcagatcggcctttaatcaacagcgcccac
caggactactatatccttaacctgatggaccatccagactctctgccttactctctctcc
agccagacagctactaacccctcctcctcttctacctcctcctcttcctccaacacagtg
gctcacgtcatgtccggccacctctcgtccccctccaccccctcctctctcttctcttcg
gccctggccccctcagaacagcagcccctccctctagccaacagccactgcagcacggac
acactcatcaacgcgcgcgaggtcctggacaacatgatgcggaccagtgcggaccgccag
acggttatccagtaccagccgaacgaatgggactctgcgtaa
DBGET
integrated database retrieval system
