Coregonus clupeaformis (lake whitefish): 121533587
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Entry
121533587 CDS
T08357
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein M-like isoform X1
KO
K12887
heterogeneous nuclear ribonucleoprotein M
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121533587
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cclu03041
]
121533587
Spliceosome [BR:
cclu03041
]
Common components
Common spliceosomal components
hnRNP proteins
121533587
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_3
HnRNP_M_NLS
RRM_MARF1
RBD_DEAH11
DUF7552
Motif
Other DBs
NCBI-GeneID:
121533587
NCBI-ProteinID:
XP_045061475
LinkDB
All DBs
Position
20:49006448..49034605
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AA seq
672 aa
AA seq
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MSTEAATPEKPGQGEMIGKAKHEPNNTRKERPQKRGGGRFEPYGNPSKRYRVFVSNIPYD
VKWQALKDLMKEKVGEVTYVEHLMDGEGKSRGCAVVEFRTEELMKKAVEKVNKYNLNGRP
LMVKEDPDGVIAQRDSHRAQGGGGGGGPPGGHGGMNMGMDRMNMERMNMGPGPGAPPMVN
IPPSLMNNSNIPNEIIHGLQAGKIGSTVFVASLDYKVGWQKLKEVFGMAGVVVRTDILED
KDGNSRGMGTVTFDMPIEAVQAVSMFNGQLLYNRVMHVKLDEKSLPKRDFAPPERPPALP
RGLSGIGLGLGPGGQPIDATALNRGVGGRMGSIGPGGMDGMGFGDGMGRMGGADDFGGGM
NNMECFGPSGMGRMNEMDRGIGGAFDREFGRNEMGMSRNNFGESFDRGMGSSLGMDRMSS
GMDRLGGGMDRLGGMERMGMERMDRVSDLDRLGGSGFDRMGSGLDRLGPSMDRLGSGLDR
MSSSVDRQGPAGFDRLGPSSLDRMSAGLDFVSPMGMADRMNTGMERMGTNFDRMGSAGID
RFSTTGLDRMGSTMVRMGAAGVGGQFDRQAEMERGGFGGNSFGGAGAGANARKGGQIFVR
NLPFDFTWKMLKDTFNTCGLVQYADIKTENGKSKGCGVVRFDNPETAEKACRIMNGYRLN
GREIDVRIDRNA
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaccgaggcagctactcctgagaaaccaggccagggggaaatgattggcaaggcc
aagcatgaacctaataataccaggaaggagaggccccagaagcgtggaggtggtcgcttt
gagccctatggaaacccatcaaagagataccgtgtgtttgtcagcaacatcccatacgat
gtgaaatggcaggcactcaaagatctaatgaaagaaaaagtgggtgaggtaacgtacgtg
gaacacttaatggatggagaaggcaaatcaaggggttgcgcggttgttgagttcaggact
gaggagctgatgaagaaggctgtggagaaggtcaacaagtacaacctgaatggtcggccc
ctgatggttaaagaggacccagatggtgtgattgcccagagggattcccacagggcccag
ggtggtggaggtggtggcggcccccccggcggccatggtggaatgaacatggggatggat
cgcatgaatatggagaggatgaacatgggcccaggaccgggagccccacccatggtcaac
atcccccccagtctcatgaacaactctaacatccccaatgagatcatccacgggctgcag
gccggcaagatcggaagcactgtcttcgtagctagcctggactacaaggttggctggcag
aagctgaaggaggtgtttggcatggcaggagtggtggtgcgtactgacatcctggaggac
aaggatgggaatagcaggggcatgggcactgtcacctttgacatgcctattgaagctgtc
caagccgtcagtatgttcaacggtcaactgctgtacaaccgggtcatgcatgtcaagctg
gatgagaagtccttgccaaaaagagactttgcaccacctgagagacccccagcactaccc
cgtggactgagtggcattgggctgggactggggcctggtggccaacccatcgacgccacc
gcactgaacagaggagttggaggaagaatgggcagcattggacctggaggcatggatggc
atgggcttcggtgatggcatgggtagaatgggaggtgcggatgacttcggtggaggaatg
aacaacatggagtgcttcggaccatctggaatgggcaggatgaatgagatggaccgtggg
attggtggtgcttttgaccgggagtttggtcgaaatgaaatgggcatgtctcgcaataat
tttggagagtcctttgatagaggaatgggtagctcactgggcatggaccgcatgagctct
ggcatggatcgcctgggtggtggaatggaccgtctgggggggatggagcgcatgggaatg
gagaggatggaccgcgtgtctgatctggacaggctgggggggtctggctttgacaggatg
ggctctgggctggaccggctggggcccagtatggataggcttggttctggcctggatcgt
atgagctccagcgtggaccgccagggcccagctgggtttgaccgcctaggcccttccagt
ttagaccgcatgtctgccggcctggacttcgtctcccccatgggcatggcggaccgcatg
aacaccggcatggaaaggatgggaaccaactttgaccgaatggggtctgccggcatcgac
cgcttttccaccactggacttgaccgcatgggctccacgatggtccgcatgggcgctgcc
ggtgttggaggccagtttgaccggcaagctgagatggagcgtggaggcttcggaggaaac
agctttggaggagccggggctggagccaacgccaggaagggtggtcagatcttcgtcaga
aatctgccctttgactttacctggaagatgctgaaggataccttcaatacatgcggtctc
gtccagtatgctgacatcaagacggagaatggcaagtccaagggctgtggcgtggttcgc
ttcgacaacccggagactgcagagaaagcctgtcgcatcatgaatggctacaggctgaat
ggaagagagatcgacgtcagaattgacagaaacgcataa
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