Coregonus clupeaformis (lake whitefish): 121533664
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Entry
121533664 CDS
T08357
Name
(RefSeq) regulator of nonsense transcripts 1-like isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03013
Nucleocytoplasmic transport
cclu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121533664
03015 mRNA surveillance pathway
121533664
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121533664
Enzymes [BR:
cclu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
121533664
5.6.2.5 RNA 5'-3' helicase
121533664
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
121533664
mRNA cycle factors
Common to processing body (P body) and stress granule
121533664
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
NPHP3_N
ATPase
SLFN-g3_helicase
nSTAND3
NAT10_TcmA_helicase
DEAD
UvrD-helicase
UvrD_C_2
AAA_16
SRP54
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
121533664
NCBI-ProteinID:
XP_045061284
LinkDB
All DBs
Position
20:complement(18104386..18121797)
Genome browser
AA seq
1107 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYEFTDFTLPSQTQTQGHTQSQLDNQVNG
PDEGLHNGGVNDVAKASQLLSELNFEEDEEDTYYTKDLPLHACSYCGIHDPACVVYCNTS
KKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAK
ADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQ
QINKLEELWKDNPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKL
KESQTQDNITVRWDLGLNKKRIAYFSLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIGH
VIKVPDTPFVKDYGDEIAIELRSSVGAPVEITHNYQVDFVWKSTSFDRMQSSLKTFAVDE
TSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPP
GTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHMSGLKVVRLCAKSREAIDS
PVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVIC
CTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKK
AAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKG
FDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIIT
PYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLN
DPRRLNVALTRAKYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFN
RPRKLVNAINPGARFMSTAMYDAREALIPGSAYDRSSTGRPSNMYFQTHDQIGMIGAGPA
HMAAMNMPIPFNLVMPPMPPPGYLAQANGPAAGRGGALKGKAGRGGRQRTRGMGNHGSSG
QANGPNSQASQDVSSQPFSQGPLTQGYITMSQPSQMSQPGLSQPELSQDSYLGDEFKSQI
DVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3324 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaagcgtacgggccgagttctcaaacgctcaccttcctggacaccgaagaa
gcggagctacttggagcagatacccagggctcggagtacgagtttaccgattttacccta
cctagccagacacaaactcaaggccacacccagagtcagctggacaatcaggtgaatggt
cctgatgaggggcttcacaatggaggggtcaatgatgttgccaaggcaagccaactcctc
tctgagttgaactttgaggaggatgaagaggacacctattacaccaaagacctcccactg
catgcctgcagttactgtggcatccatgatcctgcatgtgtggtgtactgcaacacaagc
aagaagtggttctgcaatggacgtggcaatacatctggcagccacatcgtaaaccacttg
gtgagagccaaatgcaaagaggtgactctgcacaaagacgggccgctgggcgagacggtg
ctggagtgctacaactgtggctgtcgcaacgtcttcctcctgggcttcatacccgccaag
gccgactctgtggtggtgctgctgtgcaggcagccatgtgccagtcagagcagcctgaaa
gacataaactgggacagctcccagtggcagccgttgattcaggaccgctgcttcctgtcc
tggctggtgaagatcccctcagagcaggagcagctccgggcccgccagattaccgcccaa
cagatcaacaagctagaggagctctggaaggacaatcccacggccactctggaggatctg
gagaagcccggcgtcgacgaggagcctcagcatgtgttgctgcgctacgaggatgcctac
cagtaccagaacatctttggccccctcgtcaaactggaggccgactacgacaaaaagctt
aaagagtcccagacccaagataatataacggtcaggtgggacctggggctgaataaaaag
cggattgcctatttctccttgcccaagacggattcaggtgacatgcggctgatgcaggga
gatgagatttgtctgcgctacaaaggagacctggcccccctatggaagggcatcgggcac
gtcatcaaagtcccagacacaccctttgtgaaagactatggagatgagattgctatagaa
ttgcgcagcagtgtcggagcacctgtggaaataacccacaactaccaggtggatttcgtg
tggaagtccacttcctttgacagaatgcagagttccctgaagacctttgctgtggacgag
acgtctgtgtcaggctacatctaccataagctgctgggccacgaggtggaggatgtcatc
atcaagtgtcagctgcccaaacgcttcactgcccagggcctgcccgatctcaaccactct
caggtgtatgctgtgaagactgtgctgcagagacccctcagtcttatccaaggccccccc
ggcactgggaaaactgtcacctctgccaccatagtgtaccacctcgccaggcagggcaat
ggacccgtgctggtgtgtgctcccagtaacatcgcggtggaccagctgactgagaagatc
cacatgtcgggtctgaaggtggtcaggctgtgtgctaagagcagagaggccatcgactcc
cccgtctccttcctggccctgcacaaccagatccgcaacatggacagtatgccagagctg
cagaagctgcagcagctgaaggatgagactggggagctgtcgtctgctgacgagaagcgc
taccgggccctgaagcgcaccgctgagcgagagcttctcatgaatgcggatgtgatctgc
tgtacctgtgtgggggcaggagacccccgcctggccaagatgcagttccgctcaatcctc
attgatgagagcacccaggccaccgagccagagtgcatggtgcctgtggtcctgggggcc
aagcagctcattctggtgggagaccactgccagctgggcccagtagtgatgtgtaaaaag
gcagccaaggcgggcctgtcccagtctctgtttgagcgtctggttgtgctgggcatcagg
cccattcgtctgcaggtgcagtaccgtatgcacccggccctcagcgccttcccctccaac
atcttctatgagggctccctgcagaacggcgtcaccgctgctgaccgcatcaagaaaggc
tttgacttccagtggccgcagccagacaagcccatgttcttctatgtaactcaaggccag
gaggaaatcgctagctctggaacgtcctacctgaacagaactgaggcggccaatgtggag
aagatcaccaccaggctgctgaaggctggggccaagcctgaccagataggcatcatcacc
ccctacgagggccagaggtcctacctggtgcagtacatgcagttcagtggctccctccac
acaaagctctatcaggaggttgagatcgccagcgtggatgcgttccagggcagggagaag
gactttatcatcctgtcgtgcgtacgagccaacgagcaccagggcatcggcttccttaat
gacccgcgccgtctcaacgtggccctcaccagagccaagtatggggtgatcattgtgggc
aacccaaaggccctgtccaagcagcctctgtggaaccacctgctcaactactacaaggag
cagaaggttctggtggagggacccctcaacaacctgagagagagcctgatgcagttcaac
aggccccgcaagctggtcaacgccatcaaccctggagcccggttcatgagcactgccatg
tatgatgcccgcgaggccctcatccctgggtctgcctacgatcgcagcagcacagggcgt
ccatccaacatgtatttccaaacccacgatcagatcggcatgattggggctgggccagcc
cacatggcggccatgaacatgcctattcccttcaacttagtgatgccccccatgcctccg
ccaggctacctagcccaggccaacggccctgctgcaggtcgtggtggggcactgaagggc
aaagcggggcgtggcgggcgccagaggacccgcggcatggggaaccacggtagcagcggg
caggccaacgggcccaacagccaggccagccaggacgtgtcttcccagcccttctcccag
gggccactcacccagggctacatcaccatgagccagccctcccagatgagccagcctggc
ctctcccagcctgaactttcccaggacagttatttaggcgacgagttcaagtcccagatc
gacgtggctctgtcgcaggattcgacttaccagggtgaacgtgcataccaacatggtggg
gtgactggactgtcacagtactag
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