Coregonus clupeaformis (lake whitefish): 121534037
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Entry
121534037 CDS
T08357
Name
(RefSeq) phospholipid-transporting ATPase ABCA1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu02010
ABC transporters
cclu04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
121534037
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
121534037
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
cclu02000
]
121534037
Transporters [BR:
cclu02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
121534037
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SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
SRP54
DUF4162
AAA_23
Syntaxin
Motif
Other DBs
NCBI-GeneID:
121534037
NCBI-ProteinID:
XP_041696408
LinkDB
All DBs
Position
2:complement(18143321..18198764)
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AA seq
2299 aa
AA seq
DB search
MSISTQLGLLLWKNFTCRRRQTLQLLIEIVWPLLIFFILISVRLNYPPYEQHECHFPNKA
MPSAGTLPWIQGIICNANNPCFRNPTPGESPGVVGNFNESIISRLFSDAKKILLYSQNDR
NLDGFKDLIQALKTLHANTEGFKLKDFLHDNETLSTFLLRNASFSEHAVHQIIEADVNLE
KVLVKGFGVHLRDMCKSNGTSLEDFVTITDSEVSSLVQEILCRSPGSWLNQAESHFLNNL
DFLKPIRKDVRADPEAVQQVAEAIDNLLESLGSLAVELASMKSWSDLRNEIIFLTENATS
SPSHMYQAVSRIVCGHPEGGGLKIKSLNWYEDSNYKALFGNHNTTDGEEPISAYDNTSTP
YCNAMMRNMESSPVSRMIWQALKPLLMGKILYTPDTPATQKIIHEVNRTFQELGVLRELG
GMWEEVRPKAWTFMESSEQMDLVRTLLKNNGTASFFTTQLAGTELTVEDVSNFLTKHSED
TRPHGTAFTWREVFNETDQAIMSISRFMECVNLDKMEPVANEERMVNKSMALLDDRKFWA
GIVFPNFEANSSELPAIVNYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDLRYIWGGFS
YLQDIIEHSIITVVTGAKEKTGVYIQQMPYPCYVDDIFLRVMSRSMPLFMTLAWMYSVAI
IIKSVVYEKEARLKETMRIMGLDNGILWFSWFISSLIPLLISASLLVVLLKMGNLLPYSD
PGVIFLFLGSFAVVTIMQCFLISTMFARANLAAACGGIIYFTLYLPYVLCVAWQDYVGFG
AKIVASLLSPVAFGFGCEYFALFEEQGIGIQWNNLFNSPMEEDDFSLTTAIIMMYFDSFL
YMVMTWYIESVFPGQYGIPRPWCFLFSKSYWFGEGDNRKTDFSQNKRRNCEAVCIEEEPA
HLKPGVFIENLVKVYPHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPT
SGTAYIMGKDIRSELSAIRQSLGVCPQHNVLFSMLTVEEHIWFYARLKGLSEEQVKSEIE
QILIDTGLPHKRTSRTSTLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDL
LLQYRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLVKKG
PEPSLSSFHNSSSTVSFTKKEEDCPSESSSDAGLGSEHESEAATIETAQAASICESAFVP
PDVSLISSLIFKHVPAARMVEDLGHELTYVLPYGAAKDGAFVELFKDMDNRLPDLGISSY
GVSDTTLEEIFLKVAEDNGVDTEVPSDGTLPMPRRRRHHAFGGGNAFGGDHQSCLRPQID
DDNNEHNDSDADPESREIDFLNGSDGKGSYQVKGWSLKRQQFVALIWKRFLYAQRSRKGF
FAQIVLPAVFVCVALVFSLIVPPFGKYPSLELQPWMYEEQSLFISDDAPEDASTQRLLSA
LTEGPGFGTRCMEGQPITDTTCTMGDEDWSTPEVPETLLELFRMGNWTMEEPSPTCTCSC
DGRKKMLPECPTGAGGLPPPQMKISETDTLQNLTGRNISDYLVKTYAEIIGKSLKNKIWV
NEFRYGGFSLGARSTQVLPPAGEVDDAIARVRKIFELEKGAATDRFLESLSSFINGLDTK
NNVKIWFNNKGWHSIGAFLNVMNNGILRANLPPGQDPSKFGIRTFNHPLNLTKEQLSQVA
LMTTSVDVLVSICVIFAMSFVPASFVVFLIHERVSKAKHMQFISGVQPLLYWTANFIWDM
CNYIVPATLVIIIFVCFQQKAYVSSTNLPVLALLLLLYGWSITPLMYPASFFFKIPSTAY
VVLTSVNILIGINGSISTFVMELFGNNEIGGINDILKNVLLIFPHFCLGRGLIDMVKNQA
MADALERFGENRFRSPLEWDMVGKNLFAMAVEGVVFFIITVLIQYRFCIKPINLHTKLPP
VGEEDEDVARERQRIVNGLGHGDILELRQLTKVYKRKQKPAVDRLCVGIPPGECFGLLGV
NGAGKTTTFKMLTGDSIVTSGEAFLAGKSILREIDEVHQNMGYCPQFDAINDLLTGREHL
EFYAVLRGVPEKEVCDVAEWGIRKLGLVKYVDKAAGSYSGGNMRKLSTAMAMIGGPPVVF
LDEPTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGS
VQHLKNRFGDGYTIILRVAGPDPDLPPVMKFIESELPGSTLKEKHRNMLQYQLSSSLTSL
AHIFSILAKNKNLLRIEDYSVSQTTLDQVFVNFAKDQSDDYHSKDNSVKRKEAVVDITPL
SSRQAEEKLAEERLKESLV
NT seq
6900 nt
NT seq
+upstream
nt +downstream
nt
atgtccatctcaactcagctgggcttgctgttgtggaagaactttacgtgcagaagaagg
caaacgctccaactgctgatagagatagtatggcccctgttgatcttcttcattttgata
tcagtgagactgaactaccctccgtacgaacaacatgagtgtcatttccccaacaaggcc
atgccctcggcaggtaccctgccctggatccaaggcatcatctgcaatgccaacaacccc
tgcttccgcaatcccactcctggagagtcccctggggtcgtgggtaacttcaatgagtcc
ataatctctcgtttgttctcggatgccaagaaaatcctgctgtacagtcagaatgaccgg
aatctggacggctttaaagaccttatccaggccctgaagacactacatgccaacaccgaa
ggattcaagctgaaggatttcctccatgacaatgagaccctgtccactttccttttgcga
aacgcctccttctcggaacacgccgtgcaccagataattgaggccgacgtgaacttggag
aaggtgctggtcaaaggcttcggtgtccacctgagggacatgtgcaaaagcaacggcacc
agtctggaggactttgtgaccatcacagacagcgaggtgtccagtctggtccaggagatc
ctctgcaggtccccaggctcctggctcaaccaagcagaaagccacttcctcaacaacctg
gacttcctcaaacccatacggaaagatgtgagggctgaccctgaagctgtccagcaagtg
gccgaggctatagacaaccttctggagagcctggggtccctggccgttgagctggccagc
atgaagagttggagcgacctgcgtaacgagatcatcttcctcactgagaacgcaacgtcc
tcccccagccacatgtaccaggccgtgtcacgcatcgtctgcggccaccccgagggcggc
ggactaaagatcaagtccctcaactggtacgaggacagcaactacaaggccctgttcggc
aaccacaacacaaccgacggggaggaacccatctctgcctacgacaacacatccactcca
tactgcaacgcaatgatgaggaacatggagtccagccccgtgtccaggatgatctggcag
gccctgaagcctctgctcatgggcaagatcctgtacacccccgacacccccgccacacag
aagatcatccacgaggtgaacagaacgttccaggagctgggggtcctcagagagctgggg
ggcatgtgggaagaggtgaggcccaaggcctggaccttcatggagagcagcgaacagatg
gacctagtaaggaccctactgaagaacaatggcaccgccagcttcttcaccacccaactg
gcgggcaccgagttgaccgtggaggacgtgtccaacttcctgaccaaacattcagaggac
acgcgtccccacggcaccgccttcacctggagggaagtcttcaacgagacggaccaggcc
atcatgagcatatcccgcttcatggagtgtgtaaacctggataagatggagcccgtggcc
aatgaggaaaggatggtcaacaaatccatggcactcctggacgataggaagttctgggca
gggatcgtgtttcccaactttgaggccaacagctctgaactgccggccattgtcaactac
aagatccgtatggacattgataatgtggagcgcaccaacaagatcaaagacggatattgg
gaccccggtcctcgtgccgacccctttgaggacctgcgctacatctggggcggcttctct
tacctccaggacatcatcgagcacagcatcatcacagtagtgactggcgccaaggagaag
acgggagtctacatccaacagatgccctacccctgctatgtggacgacatcttcctgcgg
gtgatgagtcgctctatgcccctcttcatgaccctggcctggatgtactctgtggccatc
atcatcaagagtgtggtttacgagaaggaggcgaggctcaaggagaccatgaggatcatg
ggattggacaacggcatcctgtggttcagctggttcatcagcagcctcatccccctgctt
atttccgccagtctgctggtggtgctgctcaagatggggaacttgctgccatacagtgac
cccggtgtcatcttcctgttcctgggttccttcgccgtggtaaccatcatgcagtgcttc
ctcatcagcaccatgtttgcccgtgccaacctggcggcggcctgtgggggtatcatctat
ttcaccctctacctgccctatgtcctctgtgtggcctggcaggactatgtgggctttggg
gcaaaaatagtcgctagcctgctgtccccagtggcctttggctttggctgtgagtacttt
gccctgttcgaagagcagggcatcggcatccagtggaacaacctgttcaacagccccatg
gaggaggacgacttcagcctgaccaccgccatcatcatgatgtacttcgactccttcctc
tacatggtgatgacctggtacatcgagtccgtcttccccggtcagtatggtattcccagg
ccctggtgcttcctcttctccaagtcctactggtttggagaaggagacaacaggaagact
gacttcagtcagaacaagagaaggaactgtgaagctgtctgtatagaggaagagccagcc
cacctgaaacctggcgtcttcatagagaacctagtcaaggtgtacccgcacgggaagaag
ctggctgtggacgggctgactctgggcttctacgagggacagatcacctctttcttgggc
cacaacggagcagggaaaaccaccaccatgtcgattctaacgggactgtttccccctacc
tctggcactgcttacatcatgggcaaagacatccgatcggagctgagcgctattcgacag
agtctgggtgtttgtccacagcacaacgttctcttcagcatgctgactgtcgaggagcac
atctggttctacgctcgtctgaagggtctatctgaggaacaggtgaagtctgagatcgaa
cagatcctgatagacactggcctgccacacaaacgcacttccaggaccagcacactttct
ggagggatgcagaggaagctctctgtggctctagccttcgtcggggggtcaaaggttgtg
attttggacgagcccaccgctggggtcgacccttacgcccgcaggggcatctgggacctc
ctgctccaatatcgtcaaggtcgtaccatcatcctctccacccaccacatggatgaggcg
gacatattgggcgaccgcatcgccatcatctcccatggcaagctgtgctgtgtgggctcc
tccctcttcctgaagaaccagctgggtacaggctactatctgaccctggtcaagaagggc
ccagaaccttccctcagctccttccacaactcctccagcaccgtctccttcactaagaag
gaggaggattgtccctctgagagcagctctgacgcaggccttggcagcgaacacgagagc
gaagcggccaccatcgaaactgcccaggctgcatccatctgtgaaagtgccttcgtgccc
cccgacgtctccctgatctctagcctgatcttcaagcatgtcccagccgcccgcatggta
gaagacctgggccacgagctcacctacgtactgccctacggcgccgccaaggacggagcc
ttcgtggagctcttcaaggacatggacaaccgcctccccgacctaggcatctccagctac
ggtgtctccgacaccaccctggaagagattttcctgaaagtggcagaggacaatggagtt
gacactgaagtcccctctgatggtactctccctatgcccagacgtcgtagacatcatgcc
tttggtggaggaaatgccttcggtggagaccaccagagctgccttagaccccagatagac
gacgacaacaatgaacataacgactcggacgcagacccagaatccagagagatagacttc
ctgaacggctcggacggtaaaggctcctaccaggtgaaaggctggagtctgaagaggcag
cagtttgtcgccttgatatggaagaggttcctgtacgctcaacgctccagaaaaggtttc
tttgctcagattgtgctccctgcagtgttcgtttgcgtcgccctggtcttcagtctcatc
gtcccgccctttggaaagtaccccagtctggagctgcagccgtggatgtatgaagaacag
tccctcttcatcagtgatgacgcccctgaagatgccagcacacaacggttattgagtgcc
ctcaccgaaggccctgggtttggaacgcgttgcatggaaggacagcctataactgacact
acctgtacgatgggtgatgaggactggtccacaccggaggtcccggagacccttctggaa
ctgttccgcatgggcaactggaccatggaggagccgtcccccacatgcacctgcagctgt
gacggccgcaaaaaaatgctccctgagtgtcctactggagccggaggactgccaccaccc
cagatgaagatcagcgagacagacaccctgcaaaacctgaccggcagaaacatctctgac
tacctagtgaagacctatgcagagatcattgggaaaagtttgaagaacaagatctgggtg
aatgaatttaggtacggtggcttctcattgggcgccaggagcactcaggtcctcccccca
gctggcgaggttgatgacgccatcgctcgagtgaggaagattttcgaattggagaagggt
gcagccacagaccgattcctggagagcttgtctagcttcatcaatggtctggacaccaag
aacaatgtcaagatttggttcaacaacaaggggtggcacagcattggagcctttctcaac
gtgatgaacaatggcatcctgcgcgccaacctgccccctggccaggaccccagcaagttt
ggcatccgcaccttcaaccacccgctcaacctcaccaaggagcagctgtcccaggtggca
ctgatgaccacctcagtggacgtgctggtgtccatctgcgtgatcttcgccatgtccttc
gtcccagccagcttcgtagtcttcctcatccatgagagagtgagcaaggccaagcacatg
cagttcatcagcggcgtgcagcccctgctttactggacggccaacttcatctgggatatg
tgtaactacatcgtcccggcgacgctcgtcatcatcatcttcgtgtgcttccaacaaaag
gcctacgtgtcgtccaccaacctgccagtgctggctttgctgctgctcctctatggctgg
tccatcactcctctgatgtatccggcatccttcttctttaagatccccagcacggcctat
gtggtgctcacctccgtcaacatcctcatcggcatcaacggcagcatctccaccttcgtc
atggagctcttcggaaataacgagattggaggtatcaatgacatcctgaagaacgtgttg
ctgatcttccctcacttctgtctgggccgaggcctcatcgacatggtgaagaaccaggcc
atggccgacgctctggagagattcggtgagaaccgcttccgatcccctctggagtgggac
atggtgggcaagaacctgtttgccatggccgtggaaggagtggtcttcttcatcatcacc
gtcctcatccagtaccgcttctgcatcaagcccattaacctgcacaccaagctccctccg
gtgggcgaggaggacgaggacgtggccagagagaggcagaggatcgtcaacggactggga
cacggagatatcctggagctccgacagctcaccaaggtctacaagaggaagcagaagccg
gctgtagaccgtctgtgtgtgggcatccctcctggcgagtgctttggcctcctgggtgtg
aacggagctggaaagaccaccactttcaaaatgctgacaggagactccatagtcacgagt
ggagaggctttcctggctggaaaaagtatactgcgggagatagacgaggtgcaccagaac
atgggctactgcccccagtttgacgccatcaacgacctgctgacgggaagagagcaccta
gagttctacgccgtcctgcgtggcgtgcccgagaaggaagtatgcgatgttgctgaatgg
ggcatccgtaagctgggcctagtaaagtatgtggacaaggcagcaggaagctacagcgga
ggaaacatgaggaaactctccactgccatggccatgataggaggaccacccgttgtgttc
ctggacgagcccaccactgggatggaccccaaagcacgcagggccttatggaactgcatc
cacagcgtcatcaaggagggacgctccgtggtgctcacctcgcacagtatggaggaatgt
gaggccctgtgcaccagaatggccatcatggtcaatggcaggttccgctgcttggggagc
gttcagcatctaaagaacaggttcggagacggctacaccatcattctgcgtgtggcgggg
ccggaccctgacctgccgccggtgatgaagttcattgagagtgagctgccgggcagcacc
ctgaaggagaagcacaggaacatgctgcagtaccagctgtcctcctctctcacctccctg
gcacatatcttcagcatcctggccaagaacaagaacctgctccggatagaggactactct
gtgtcacagaccacactggaccaggtgtttgtgaactttgccaaggaccagagtgacgat
taccactcaaaagacaattcagtaaagcgcaaagaggcggtggtggacattaccccgctc
agctcgcggcaggctgaagagaagctagccgaggagaggctaaaggagagcttggtgtga
DBGET
integrated database retrieval system
