Coregonus clupeaformis (lake whitefish): 121534062
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Entry
121534062 CDS
T08357
Symbol
prrx1b
Name
(RefSeq) paired mesoderm homeobox protein 1b isoform X1
KO
K09329
paired mesoderm homeobox protein
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121534062 (prrx1b)
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain Paired-related
121534062 (prrx1b)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Homeodomain
OAR
Homeobox_KN
DUF6210
Motif
Other DBs
NCBI-GeneID:
121534062
NCBI-ProteinID:
XP_041696439
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All DBs
Position
20:51251214..51260605
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AA seq
245 aa
AA seq
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MTSSYAHVRDRQATISNRLESPITSNLENLQAKKNFSVSHLLDLEEAREMVGTQADESVG
EAGRNMLESPGLTSGSDTTQQENEQLNAEEKKKRKQRRNRTTFNSSQLQALERVFERTHY
PDAFVREDLARRVNLTEARVQVWFQNRRAKFRRNERAMLASKNASLLKSYSGDITAVEQP
IVPRPAPRPNDYLSWGSASPYSAMATYPPTCSNPNTSQGMNMANSIANLRLKAKEYSLNQ
VPTVN
NT seq
738 nt
NT seq
+upstream
nt +downstream
nt
atgacttctagctatgcacatgtaagggacaggcaagcaacgatatcaaatcgcttggag
agtccgattacatcgaatctggaaaaccttcaagccaaaaagaacttctcggtgagccac
ctgttggatctggaggaggccagggaaatggttgggacacaggcggacgagagtgtcggt
gaggcagggaggaatatgcttgagtccccggggctgaccagtgggagcgacaccacccag
caggagaatgagcagctgaacgcggaggagaagaagaagaggaaacagaggaggaacagg
actacgttcaacagcagccagctgcaggctctggagagagtgtttgagaggacacactac
cccgacgccttcgtcagagaggacctggcacgcagggtcaacctcacagaggcacgggtg
caggtgtggtttcagaacagaagggcaaagtttcgtcggaacgagcgtgccatgctggct
agcaagaacgcctcgctcctcaagtcctactccggggacatcacggccgtggagcagccc
attgtaccccgtccggccccccgcccaaatgactacctgtcctggggcagtgcctctcct
tacagtgccatggcaacctacccccccacatgctccaaccccaatacatcccagggaatg
aacatggctaacagcatcgccaacctgcggctaaaagcaaaggagtacagcttgaaccag
gtgcccacggtcaactga
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