Coregonus clupeaformis (lake whitefish): 121534114
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Entry
121534114 CDS
T08357
Symbol
ncbp2
Name
(RefSeq) nuclear cap-binding protein subunit 2 isoform X1
KO
K12883
nuclear cap-binding protein subunit 2
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03013
Nucleocytoplasmic transport
cclu03015
mRNA surveillance pathway
cclu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121534114 (ncbp2)
09122 Translation
03013 Nucleocytoplasmic transport
121534114 (ncbp2)
03015 mRNA surveillance pathway
121534114 (ncbp2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121534114 (ncbp2)
03041 Spliceosome [BR:
cclu03041
]
121534114 (ncbp2)
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
121534114 (ncbp2)
Spliceosome [BR:
cclu03041
]
Common components
Common spliceosomal components
Cap binding complex
121534114 (ncbp2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_10
RRM_5
Motif
Other DBs
NCBI-GeneID:
121534114
NCBI-ProteinID:
XP_041696522
LinkDB
All DBs
Position
20:22027509..22030855
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AA seq
155 aa
AA seq
DB search
MSIKLNALLSDSYVDVSQYRDQHFKGNRYEQEKLLKQANTLYVGNLSFYTTEEQVYELFS
KSGDVKRIIIGLDKVKKTACGFCFVEYYTRTDAENAMRFVNGTRLDDRIIRTDWDAGFKE
GRQYGRGKSGGQVRDEYRQDYDPARGGYGKVVSRP
NT seq
468 nt
NT seq
+upstream
nt +downstream
nt
atgtctattaaattgaatgcgctattaagcgactcctatgttgacgtaagccaatacaga
gaccaacattttaagggcaatcgatatgagcaagagaaacttctgaaacaggctaacaca
ctctacgtgggcaacctgtccttttacaccacagaagaacaagtgtacgagctcttctcc
aagagtggggatgtaaagagaatcatcatcggcctggataaggtgaagaagacggcgtgc
ggcttctgcttcgtcgagtactacacgcgtacagatgcagaaaatgctatgaggtttgtc
aacgggacacgtctggatgaccgcatcatcagaactgactgggacgctggtttcaaagag
ggcaggcagtatggccgtggcaagtccggtggtcaggtcagagacgaatacagacaagat
tatgacccagcccgggggggctatgggaaagtcgtctcacgaccataa
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