Coregonus clupeaformis (lake whitefish): 121534120
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Entry
121534120 CDS
T08357
Symbol
hps3
Name
(RefSeq) Hermansky-Pudlak syndrome 3 protein isoform X2
KO
K20190
Hermansky-Pudlak syndrome 3 protein
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121534120 (hps3)
Membrane trafficking [BR:
cclu04131
]
Endosome - Lysosome transport
Others
BLOC-2 complex
121534120 (hps3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HPS3_C
HPS3_N
Motif
Other DBs
NCBI-GeneID:
121534120
NCBI-ProteinID:
XP_041696530
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All DBs
Position
20:22280419..22324749
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AA seq
1040 aa
AA seq
DB search
MVHVYNCHPFASQQIVPTEQEPGLVCCGGGALFVVSAGGCKIECFQLGEEGCPLICRFAT
MGTVQSILHSEIGDYLVTIEEKNNATYLRAYTNWRYQAAEKTRVSVRLLGHFLRGSSLRG
APKEQMEIIEIPLFERPLCVACCGVTGDLLVGCPKSLVLFSLKRQALNDKLSILDFERCL
ILHLPGLLPQQVAICAGYIALQVELEVLVVKLERLPGAAPTQKSTDKKPQDHSLVPKDMI
TGAEQDNETEVRREGLAGHHDQDDFFIFPKHQELLGDRAKDCGFKVSLEWTGMESEARGN
LAITYILYRRFAPDFFQGCSVEETRLHSLQFHPVFTSNQEVCVEGGRGVEPTCVFCFFSL
PKTGYLYSVRGGVQMVSAYQYPEKAQQAVLTDLFLHIITKNALQCFSVRCTAVAARAEDP
YIDTTMKACPPITMEMCALRMQLFIGLKALCHYRHYIVLLTAADVETREDTERTARRVTN
RKSSFTKPQNPSEMGHGWNLYVVNTVPPLQLYNEMVEYSKKYEETNPLSQSCLHLLSEAH
LLLRATLLDPRVGNPVERPLTTGQNLAQAMRSTTTGTTDREELQQAFLESCAQLGDCFSR
FDKRDCHLALPYYKMSGLSVTEVIFRNRGLSNSLCGYGKGFLFFLKHSLCEETLEQLTEE
TANEVLDIFGAAEPSQLPHVIASPSMVRASPDCGLAHLERLEAIGAPSVPLTLSKAALAL
RMGDLQLYRQHMDRHTEMLQVYGFIEEAKLLLHGRGDGVVPTLLARHLRDSQDGLLVAAM
VALHENDKVKLDEANLFFQELCWDVSGPQGGPQLLVDFWEALLMASSQEAVIQELLFRLT
TVYIDRITRRDGHGFKPLKSADDLINWCSHYGVLYPWVSILTPAHFNVIPDDQEDLHKLQ
SLLCGPTLDVSSILPLLEQLPDGDNAGLSVHVLCATKLGRHESSMERLLDRCPQAIIPYA
NHELQNNKMALWWQKLFPELCERTRATRGENAILLSALKETLVVVAMELNPLEFLGLLPD
DGTAHFFLPHLLECSQRNGP
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atggttcacgtatacaactgccaccctttcgcgtcccagcaaatcgtgccaaccgagcag
gaaccggggttggtgtgctgtggcggaggtgccctattcgtggtgtccgctggaggatgc
aagatcgagtgttttcaactgggagaggaggggtgtcctctcatctgccgcttcgccacc
atggggactgtgcagagcatcctacacagcgagataggggactacctggtgaccatcgag
gagaagaacaacgccacctacctccgcgcctacaccaactggcgctaccaggcggctgag
aagacccgcgttagtgtgcgtctgctgggccatttcctgcgcggctcatccctgcgcggg
gctcccaaggagcagatggagatcattgagattccattgtttgagcgtccgctgtgtgtg
gcgtgctgtggggtgaccggagacctcctggtggggtgtcctaagagcctggtgctgttc
agtctaaagagacaggccctcaacgacaagctctccatcctggactttgagcgctgtctg
atcctccacctcccgggactgttaccccaacaggtggcgatctgtgcagggtacattgcc
ctgcaggtagagctggaggtgctggtggtcaagctggagagacttcctggtgccgcccct
acccagaagtcaactgacaagaagccccaggaccacagtctggtccccaaagatatgatc
actggagcagaacaggacaacgagacggaggtgaggagagagggtctggctggtcaccat
gatcaggatgacttcttcattttccctaagcaccaagagctgctgggggacagggccaag
gactgtgggttcaaggtctctctggagtggaccggcatggagagtgaggccaggggcaac
ctcgccatcacctatatcttatacaggcgttttgctccagacttcttccagggctgcagt
gtggaggagacccgcctgcactccctgcagttccaccctgtgttcaccagtaaccaggaa
gtgtgtgtggaggggggtagaggggtggagccgacgtgtgtgttctgtttcttctcgctg
cccaagacgggctacttgtacagcgtgaggggcggggttcagatggtctcagcctatcag
tatccagagaaggcccagcaggccgtcctcactgacctcttcctccacatcatcacaaag
aatgctctccagtgcttctccgtgaggtgtacagcagtggcagccagagctgaggaccct
tacatcgacaccacaatgaaggcctgtcctcccatcaccatggagatgtgtgctctgcga
atgcagctgttcattggtctgaaagctctgtgtcattaccgtcactacatcgttctgctg
accgctgcagatgtggagaccagggaggacacagagaggaccgcacgcagggtcacgaac
aggaagtcgtccttcaccaagccccagaatcccagtgagatgggtcatggctggaacctg
tacgtggtcaacaccgtccccccactccagctctacaacgagatggtggagtacagtaag
aagtatgaggagaccaaccctctgtctcagagctgtctgcacctgctcagtgaagcccac
ctcctcctgagagccacgctcctggacccccgggtgggaaaccctgtagagcggcctctg
accactggtcagaacctagcccaggccatgagatctacaacaacagggaccacagaccga
gaggagctgcagcaagccttcctggagagctgcgcccagttaggagactgcttcagcagg
tttgataagcgtgactgccacctggccctgccctactataagatgtcaggcctgtctgtg
accgaggtgatcttcaggaacaggggtctgtctaacagcctctgtggctacgggaaaggc
ttcctcttcttcctcaaacactccctctgtgaggagaccctggagcagctcactgaggag
acagccaacgaggtgctggatatcttcggtgcggccgagccgtcccagctcccccatgtc
atagccagcccctccatggttagagctagccctgactgtggcctggcccacctagagcgc
ctggaggccatcggagccccctccgtacccctcaccttgtccaaggctgccctggccctc
cgcatgggagacctgcagctctacaggcaacacatggaccgacacacagagatgctgcag
gtgtatgggttcattgaggaagccaagctgctgttgcatggcagaggggacggggtggtg
cccactctcctggcacgccacctcagagacagccaggacggcctgctggtggcagccatg
gtggcgctgcacgagaacgacaaggtcaaactggacgaggctaacctcttcttccaggag
ctgtgttgggacgtgtcggggccccagggaggccctcagctgctggttgacttctgggag
gccctgctgatggcctcgtcacaggaagctgtcatccaggagctgctgttccgcctcacc
actgtctacatcgaccgcatcacacgccgagacggccacggattcaaaccgctcaaaagc
gcagacgacctgatcaactggtgttctcactacggcgtgttgtatccctgggtcagcatc
ctaactccagctcacttcaacgtcattccagatgaccaagaggacctccacaaactacag
tccctgctgtgcggccccaccctggacgtgtcgtccatcctgcccctgttggagcagctg
ccagacggggacaacgcggggctcagtgtgcacgtgctctgtgccaccaagctgggccgc
cacgagagctccatggagaggctgctggaccgctgtcctcaggccatcatcccttacgct
aaccacgagctgcagaacaacaaaatggctctgtggtggcagaagctgttccctgagctg
tgtgagagaaccagagcaacacggggcgagaacgccatcctactgtctgcactcaaagaa
acgctggtggtggttgccatggagctgaaccccctggagttcctgggcctgttgcctgac
gacgggacggcccacttcttcctgcctcacctgctggagtgcagccagagaaacgggccg
tag
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