Coregonus clupeaformis (lake whitefish): 121534140
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Entry
121534140 CDS
T08357
Symbol
rxrgb
Name
(RefSeq) retinoic acid receptor RXR-gamma-B isoform X1
KO
K08526
retinoid X receptor gamma
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03320
PPAR signaling pathway
cclu04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
121534140 (rxrgb)
03320 PPAR signaling pathway
121534140 (rxrgb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121534140 (rxrgb)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
cclu03310
]
121534140 (rxrgb)
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
121534140 (rxrgb)
Nuclear receptors [BR:
cclu03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
121534140 (rxrgb)
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Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
Nuc_recep-AF1
zf-C4
tRNA_bind_3
Motif
Other DBs
NCBI-GeneID:
121534140
NCBI-ProteinID:
XP_041696574
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Position
20:23181342..23241546
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AA seq
505 aa
AA seq
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MTVAIGRSPAFATPLLGPALTCPCTVLWLGSGIHWDAVAAAAIRQRRSANSHIMDSRHND
PYLHLNSQGPMSMPHSHGPPMGGMVGHPSVSSTSRPLPSPMSTLGSPMNGLASPYSVITS
SLGSPSTPGINFGSLHSPQMREMNSVSSSEDIKPPPGLQNLGNINYNCTSPGGMSKHICA
ICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYTCRDSKECLIDKRQRNRCQYCRYQKCL
AMGMKREGVSVQEERQRGREPGENEVESTSSFNEEMPVDKILDAELAVEPKTETSADEGP
GNSTNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRS
VTVKDGILLATGLHVQRSSAHSAGVGSIFDRVLTELVSKMKDMKMDKTELGCLRAIVLFN
PDAKGLSNPPEVEGLREKVYASLESYTKAKYPDQPGRFAKLLLRLPALRSIGLKCLEHLF
FFKLIGDTPIDTFLMEMLEAPHQIT
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgactgttgccattgggagaagccctgctttcgccacccccttgctgggccccgcgttg
acctgcccttgcacagtgctctggctggggagtggaattcactgggatgctgttgctgcc
gcggctataagacaacgacgcagcgctaactcacacattatggacagtaggcataatgac
ccttatttacacctcaattcccaagggccaatgagcatgccccactcccatggccctcca
atggggggcatggtgggacacccctccgtcagcagcacctccaggcccctcccatcccca
atgagcaccctgggctcgcccatgaatggcctggcgtcgccctactccgtcatcacgtct
tccctgggctcgccctccacgccagggatcaacttcggatcgctccacagtccacagatg
agagagatgaacagtgtcagtagttcggaggacatcaagcctcctccgggtctccagaat
ctagggaacatcaactacaactgcaccagccctggaggcatgtccaaacacatctgtgcc
atctgtggagaccgatcatcagggaagcactatggcgtgtacagttgtgaaggctgcaaa
ggcttcttcaagagaaccatccggaaagacctcacctatacgtgtcgagacagcaaggag
tgcttgatagacaaacgacagcgcaaccgctgccagtactgccgctaccagaaatgccta
gccatgggcatgaagagagaaggtgtgtcggtgcaggaggagaggcagcgggggagggag
ccgggggagaatgaggtggagtccaccagtagttttaatgaggagatgcccgtcgataag
attctggacgcagagcttgccgtggaacccaagacagagacatctgcagacgaaggccct
ggcaactcgacaaacgacccggtcaccaacatctgccaggcagcagacaaacagctgttc
accctggtggagtgggcaaagaggatccctcacttctccgagctgcccttagacgaccag
gtcattctactacgggcaggctggaacgagctcctcatcgcgtctttctcacaccgctct
gtcacggtaaaagacggaatcctattggccacgggcctccacgtccagagaagcagtgcc
cacagtgccggagtgggctccatctttgacagagtcttgacagagttggtgtcaaagatg
aaagacatgaagatggacaagacagagctgggctgccttcgagccatcgtcctcttcaac
ccagatgcaaaaggcctgtcgaatccaccagaggtggaagggctgagggagaaggtctac
gcctcgctggagtcctacaccaaagccaagtacccagaccagcccggcaggtttgctaaa
ctgttgctgcgtctccccgccctgcgctccataggcctcaagtgtctggagcacctgttc
ttcttcaagctgataggagacacacccatagacaccttcctcatggagatgctcgaagcg
ccacaccaaatcacatga
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