Coregonus clupeaformis (lake whitefish): 121534189
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Entry
121534189 CDS
T08357
Name
(RefSeq) cytoplasmic FMR1-interacting protein 1 homolog isoform X1
KO
K05749
cytoplasmic FMR1 interacting protein
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04810
Regulation of actin cytoskeleton
cclu05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
121534189
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
121534189
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121534189
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
121534189
Factors involved in mRNA localization
Other mRNA localization factors
121534189
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FragX_IP
CYRIA-B_Rac1-bd
MauJ
CsiV
Motif
Other DBs
NCBI-GeneID:
121534189
NCBI-ProteinID:
XP_041696663
LinkDB
All DBs
Position
20:58998548..59157563
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AA seq
1253 aa
AA seq
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MASTVTLEDALSNVDLLEELPLPDQQPCIEPLPSSLMYQPNFNTNFEDRNAFVTGIARYI
EQATVHSSMNEMLEEGQEYAVMLYTWRSCSRAIPQVKCNEQPNRVEIYEKTVEVLEPEVT
KLMNFMYFQRTAIDRFCGEVRRLCHVERRKDFVSEAYLLTLGKFINMFAVLDELKNMKCS
VKNDHSAYKRAAQFLRKMSEPSSIQESQNLSMFLANHNKITQSLQQQLEVINGHDELLAD
IVNLCVDYYDNRMYLTPNEKHMLLKVMGFGLYLMDGNNSNIYKMDAKKRINLTKIDKFFK
QLQVVPLFGDMQIELSRYIKTSAHFEENKNRWSCTSSGSSPQYNICEQMVQIREDHMRFI
SELARYSNSEVVTGSGRQEAHKTDQEYRKLFDLALQGMQLLSQWSAHVMEVYSWKLVHPT
DKYSNKECPDNAEEYERATRYNYTSEEKFSLVEVMAMIKGLQVLMGRMESVFNHAIRHTI
YSALQDFAQLTLRDPLRQAIKRKKNVVQSVLQAIRKTICDWETGREPHNDPALRGEKDPK
GGFDIKVPRRAVGPSSTQLYMVRTMLESLIADKSGSKKTLRSSLEGPTIIDMEKFHRESF
FYTHLLNFSETLQQCCDLSQLWFREFFLELTMGRRIQFPIEMSMPWILTDHILETKEASM
MEYVLYPLDLYNDSAHYALTKFKKQFLYDEIEAEVNLCFDQFVYKLADQIFAYYKILAGS
LLLDKRLRADCKNQGANIPWPASNRYETLLKQRHVQLLGRSIDLNRLITQRVSAALYKSL
ELAINRFESEDLTSIVELEGLMNINRMTHKLLSKFLTLDSMDAMFREANHNVSAPYGRIT
LHVFWELNYDFLPNYCYNGSTNRFVRTVLPFSQEFQRDKPPNAQPQYLYGSKALNLAYSS
IFGFYRHFVGPPHIKAMCRLLGYQGIAVVMEELLKVVKSLLQGTIMQYVKTLMEVMPKIC
RLPRHEYGSPGILEFFHHQLKDIVEYAELKTVCFQNLREVGNALLFCLLSEQSLSQEEVC
DLLHAAPFQNILPRVHVKEGERLDAKMKRLEAKYTALHLVPLIERLGTPQQIAIAREGDL
LTKERLCCGLSMFEVILTRVRGFLDDPIWRGPLPSNGVMHVDECVEFHRLWSAMQFVYCI
PVGAHEFTVEQCFGDGLHWAGCMIISLLGQQRRFDILDFSYHLLKVQKHDGKDEVIKSVP
LKKMVDRIRKFQVLNDEIFAILNKYLKSGDGENMPVEHVRCFQPPIHQSLASN
NT seq
3762 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccacggtgaccctggaggatgctctgtccaatgttgaccttctggaggagctg
cctctcccagaccagcagccctgcatcgagcccctaccttcctccctgatgtaccagccc
aacttcaacaccaactttgaggaccgtaatgcctttgtgacggggatcgccagatacatc
gagcaggccaccgtccactctagcatgaatgagatgctggaggagggccaggagtatgca
gtgatgctgtatacatggaggagctgctctcgcgctatcccacaggtgaagtgtaatgag
cagcccaacagagtggagatctatgagaagacagtggaggtgctggagcctgaggtcacc
aagctcatgaacttcatgtacttccagcgaacggcgatagaccggttctgtggggaggtg
cgccgtctctgccacgttgagaggaggaaggactttgtctcggaggcctacctcctgacc
ttggggaagttcatcaacatgttcgctgtgctggatgaactcaagaacatgaagtgtagc
gtcaagaacgaccactctgcctacaaacgagctgcccagttcctcaggaagatgtcagaa
ccctcatccatccaggagtctcagaacctttccatgtttctggccaaccacaacaagatc
acacagtctctgcagcagcagttggaggtgattaacggccacgatgagctgctggctgac
atagtcaacctgtgtgttgattactatgacaacaggatgtacctgacccccaacgagaaa
cacatgctgctcaaggtgatggggtttggtctgtatctgatggatggcaataacagcaac
atctacaaaatggacgccaagaagaggatcaacctgacaaagattgacaagttcttcaag
cagctgcaggtggtgcctctgtttggtgacatgcagattgagctgtccagatacatcaag
accagcgcacactttgaagagaacaagaaccggtggtcatgtacctcatcaggcagcagt
cctcagtataatatctgtgagcagatggttcagatcagggaagaccacatgaggttcatc
tctgagctggctcgctacagcaacagtgaggtggtgacagggtctggtcgtcaggaggcc
cacaagacagaccaggagtacaggaagctgtttgacctggctctgcaggggatgcagctg
ctgtcccagtggagcgcacatgtcatggaagtgtactcgtggaagctggttcatccaact
gataagtactctaacaaggagtgtcctgacaacgcagaggagtatgaacgagctacacga
tacaattacaccagcgaggagaagttctccctggtcgaggtgatggccatgataaagggt
ttgcaggttctgatgggtcgtatggagtcggtgttcaaccacgctatccgccacaccatc
tactcagccctgcaggacttcgcccagctcaccctgagagacccgctacggcaggccatc
aagaggaagaagaacgtggtgcagagtgtcctgcaggccatcaggaagaccatctgtgat
tgggagactgggcgtgagccccacaatgaccccgccctgcgaggagagaaagaccccaag
ggaggctttgacatcaaggttccccgccgcgccgtgggcccctccagcacgcagctgtat
atggttcgtaccatgctggagtctctgatagctgataagagtggttctaagaagactctc
cgcagcagtctggagggacccaccatcattgacatggagaagttccacagagagtccttc
ttctatacacacctgctgaacttcagcgagaccctgcagcagtgctgcgacctgtctcag
ctgtggtttagagagttcttcctggagctgaccatgggtcgcaggatccagttccccatc
gagatgtccatgccctggatcctcacagaccacatactggagaccaaggaggcctctatg
atggagtatgtgctgtaccctctggacctctataatgacagcgcacactatgccctgacc
aagttcaagaagcagttcctctacgatgagattgaagcagaggtcaacctgtgttttgat
cagtttgtctacaagctggctgatcagatatttgcctactacaagattctagctggaagt
ctgctgctggataagcgtctgagagcggactgtaagaaccagggagccaacatcccctgg
cccgcatccaaccgctacgagaccctgctgaaacaacgccacgttcagctgctgggtcgt
tccatagacctgaaccgtctgatcacccagagggtgtctgctgctctctacaagtctctg
gagctggccatcaaccgcttcgagagtgaagatctcacctccatcgtggaactagaaggt
ctgatgaacatcaaccgtatgacccacaagctgctgtctaagttcctgacgctggacagt
atggacgccatgtttcgagaggccaatcacaacgtctccgccccctacggacgcatcaca
ctccacgtcttctgggaactcaactacgacttcctccccaactactgttacaacggatct
actaacaggtttgtccgcacggtcctgcccttctctcaggagtttcagagggacaagccg
cccaacgcccagccccagtacctgtatgggtcaaaggctctgaacctggcgtacagcagt
atctttggtttctacaggcactttgttggtcctcctcacatcaaggccatgtgtcgcctg
ctggggtaccagggcatcgctgtggtcatggaggagctgctcaaagtggtcaagagcctg
ctccagggaaccatcatgcagtatgtgaagaccctgatggaggtgatgcctaagatctgc
cgtctcccccgccacgagtacggctccccgggtatcctggagttcttccaccaccagctg
aaggacatagtggagtatgcagagttgaagacggtctgcttccagaacctcagagaagtc
ggcaacgctctgctcttctgtctgctcagcgaacagagcctgtctcaggaggaagtttgt
gacctgcttcatgccgcaccattccagaacattctgcccagggtccatgtcaaagagggt
gagcgtcttgatgccaagatgaaacgcctggaggctaaatacacagccctgcacctggtt
cccctgatagaacgcctgggaacccctcagcaaatagccatagctcgtgaaggtgacctg
ctgaccaaagagcgtctgtgctgtggcttgtccatgttcgaggtcatcctgactcgtgtc
cgcggtttcctggacgaccccatctggcgcggcccgttgcccagcaacggcgtgatgcac
gtggacgagtgtgtggagttccaccggctgtggagcgccatgcagtttgtttactgcatt
cctgtaggagctcacgagttcaccgtggagcagtgtttcggggacggtctccactgggct
gggtgtatgatcatctccctactgggtcaacagagacgctttgacatcctggacttcagc
tatcacctgctgaaggtgcagaaacacgacggaaaggatgaggtcatcaagagtgtgcct
cttaaaaagatggtggacagaatccgcaagttccaggttctcaacgatgagatctttgcc
attctgaacaagtacctgaagtcaggcgatggagagaacatgccagttgagcatgtacgg
tgcttccagcctcctatccaccaatccctggccagcaattga
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