Coregonus clupeaformis (lake whitefish): 121534214
Help
Entry
121534214 CDS
T08357
Symbol
sox1b
Name
(RefSeq) transcription factor Sox-1b
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121534214 (sox1b)
Transcription factors [BR:
cclu03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
121534214 (sox1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
121534214
NCBI-ProteinID:
XP_041696715
LinkDB
All DBs
Position
20:complement(61574349..61577757)
Genome browser
AA seq
338 aa
AA seq
DB search
MYSMMMETDLHSPVPQTNTNSGHTGGSNNGNKVNQDRVKRPMNAFMVWSRGQRRKMAQEN
PKMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKTLLKKD
KYSLAGGLLTGTGGGGVGLGMSPGVGQRLDSPGGHGGSSAASYAHMNGWANGAYSGQVAA
AAAAAAMMQEAQLAYSQHPGSGHHHHSHHHHPHNPQPMHRYDMSALQYSPISNSQSYMSA
SPSGYGGITYTQHQSSGVASSGSIGTLGSLVKSEPSVSPPVSTHSRAPCPGDLRDMISMY
LPTGEAAGDPSVQSRLHALPQHYQSSTTGYLKKRTTLW
NT seq
1017 nt
NT seq
+upstream
nt +downstream
nt
atgtatagtatgatgatggagactgacctacactccccagtgccccaaacgaacacgaat
tcggggcacacgggaggatcaaacaatgggaacaaagtcaaccaagaccgcgtaaagaga
ccgatgaacgccttcatggtttggtcccggggccagcggcggaagatggctcaggagaac
ccgaaaatgcacaactccgagatcagcaagcggctcggcgcggagtggaaggtgatgtcc
gaggcggagaagagacccttcatcgacgaggcgaagcggctacgagctatgcacatgaag
gagcatccggattataaatacagaccgagacggaagaccaagacgctgttaaaaaaggac
aaatactctttggccggtgggctgctcaccgggacagggggtgggggtgtcggtctgggg
atgagccctggggtcggacagaggttagacagtcccgggggtcacggtggttcgtctgct
gccagctacgcgcacatgaacggctgggcgaatggtgcgtactcggggcaggtggctgca
gctgcggcggccgcggccatgatgcaggaggctcagcttgcctacagccagcacccgggc
agcgggcaccaccaccactcacaccaccaccacccgcacaacccccagcccatgcaccgc
tatgacatgtcggccctccagtacagccccatctcgaactctcagagctacatgagcgcc
tctccgtccggctacggcgggatcacctacacgcagcaccagagctctggtgtcgcctcg
tccggatcgatcggcacgctgggctctctggtgaaatcggaaccgagtgtgagccctccc
gtctctactcactcgcgcgccccgtgtcccggggacttgagggacatgataagcatgtat
ttaccgacgggggaagctgcaggtgacccgtcagttcaaagtagacttcacgcgctgccg
cagcactaccagagctccacgacagggtacctaaagaaaaggacgacgttgtggtag
DBGET
integrated database retrieval system
