KEGG   Coregonus clupeaformis (lake whitefish): 121534323
Entry
121534323         CDS       T08357                                 
Name
(RefSeq) exosome complex component CSL4
  KO
K07573  exosome complex component CSL4
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Pathway
cclu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    121534323
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cclu03019]
    121534323
Messenger RNA biogenesis [BR:cclu03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     121534323
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     121534323
SSDB
Motif
Pfam: EXOSC1 ECR1_N SPK RRP4_S1
Other DBs
NCBI-GeneID: 121534323
NCBI-ProteinID: XP_045074738
LinkDB
Position
Unknown
AA seq 194 aa
MSPMKLCVPGDRLCSTEDCMPGTGVYLRHGYIYSSLAGYVLRKNEGEELPVISVVRETEA
QLLPDVGAIVTCKVTSINPRFAKVHILYVGSTPLKDRFRGTIRKEDVRATEKDRVETYKS
FRPGDIVLAKVISLGDVQSNYLLTTAENELGVVVAHSEAGAQMVPISWCEMQCPRTHAKE
FRKVARVQPEYLQA
NT seq 585 nt   +upstreamnt  +downstreamnt
atgtcgcccatgaagctgtgtgttccaggtgataggctatgcagcacagaggactgtatg
cctggtactggggtgtacctacgacacggctacatctactcctcgctagcaggctacgta
ctcaggaagaacgaaggagaggagctaccagtcatctctgtggtaagagaaacagaggcc
cagctactgccagatgtaggagccatagtcacctgtaaggtgaccagtatcaaccccagg
tttgccaaggtccacatcctctacgttggttccacgccactgaaggaccgctttagagga
accatcaggaaagaagatgtacgagcaacagaaaaagacagggtggagacgtataaaagc
ttccgtcctggagacatcgtcctggctaaagtcatctccctgggagacgtccagtccaac
tacctgttgaccacagccgagaacgagctgggggtggtggtagcccacagtgaagcagga
gcccagatggtgcctatcagctggtgtgagatgcagtgcccgcggacgcatgccaaagag
ttccgcaaggtggccagggtgcaacccgagtacctgcaggcgtga

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