Coregonus clupeaformis (lake whitefish): 121534337
Help
Entry
121534337 CDS
T08357
Name
(RefSeq) MHC class II regulatory factor RFX1
KO
K09173
regulatory factor X 1/2/3
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121534337
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Other basic domains
RF-X
121534337
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BCD_RFX
RFX_DNA_binding
RFX1_trans_act
ThermoDBP-RP_arch
Syntaxin
Motif
Other DBs
NCBI-GeneID:
121534337
NCBI-ProteinID:
XP_041696919
LinkDB
All DBs
Position
38:3802320..3819384
Genome browser
AA seq
780 aa
AA seq
DB search
MATPGYTEELQPAPQRNAVTIATQSATPSRSTPTQFNQSVSIVSTTGQDKPPAQTTPTKA
QNQKTVVLATPSQTQFVTTEIQSSATQHSNGQSSTPQYIVVTVTEGSLHSSDSVSESSPP
VAVFQTGVPTQVVQQTTQQQQHVYSSQVQYVEGEDASYTTASTIRSGSYPYSDSPLYSQT
PPSSSSSYYEATPTSGSQVTNSVTSQSVSITAATGGGGSGYVIQGGYVLGGGGSEGGTYS
SHNTRAAPATVQWLLDNYEGAEGVSLPRCTLYCHYLLHCQEHKLEPVNAASFGKLIRSVF
MGLRTRRLGTRGNSKYHYYGLRIKASSSLLRLIDDQQHLAIRQQPFSQKHRIKPVQKVEG
MTNGMSLGAGQQQGAGLSDISAQVQQYQQFLDASRALPEFPELDLQDGPLPDGIIPEHIT
AFQQLYREHCEAILDVMVNLQFTLVETLWKTFWRFSESIDADTLSVHGESEERLPKWYLV
VLCKYQPVLHWTRDCDNTLYQALVEILIPDVLRPIPSALTQAIRNFAKSLESWLTSAMMN
IPEEMVRIKVVCAGAFAQTLRRYTSLNHLTQAARAVLQNTAQVNQMLSDLNRVDFTNVQE
QASWVCRCDDGVVQRLEQDFKQTLQQHNSLEQWAAWLDGVVSQVLKPYQHSPAAFPKAAK
LFLLRWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPIAVMG
EFASVGRSLNFQDPDKDEEDDEEEESDEEGVEMTMPSNSAGLGEGESSLEPPIKLARTDP
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccccaggctacacagaagagctccagccggccccccagcgcaacgctgtcacc
atagcaacacaatcagccacgccctcccgctccacgccaacccagttcaaccagtcagtg
tccatcgtctccacaaccggacaggacaaacctcctgctcaaaccacgcccaccaaggcc
cagaaccagaagacagtggttctggccacgccttctcagactcagtttgttaccacggag
atccagagttctgccactcagcatagtaacggacagagttccacaccacagtacatcgta
gtaaccgttacagagggttctctccattctagtgacagtgtatcagagtccagtcctcca
gtagctgtgtttcagacaggggtccccacccaggtagtacagcagaccacccaacagcag
cagcatgtttactctagtcaggttcagtatgtggagggagaagacgcttcttacaccacc
gcctctaccattcgttctggcagctacccgtactccgactcccccctctactcccagacc
cctccctcttcctcctcttcctactacgaagccacgcccacctcggggtcacaggtcact
aactccgtgacctcacagtcagtctccataactgcggcaacgggaggaggagggagtggt
tacgtcatccagggcgggtacgtattgggaggggggggcagcgaaggaggaacctactcc
agtcacaacaccagagcagcccctgccacagtacagtggctgctagataactatgagggt
gctgagggggtcagtctgcctcgctgtaccctctactgccactacctcttacactgtcag
gaacacaaactagaacctgtcaacgctgcctccttcggcaagctcatcagatctgtcttc
atggggctgaggacaagacgcctgggcacacgagggaactctaagtaccactactatggt
cttcgtatcaaggccagctcctctctactccgactgatagacgaccagcagcacctagcc
ataagacagcaacccttctctcagaaacacaggataaagccggtgcagaaggtggagggc
atgaccaatgggatgtctctgggggcggggcagcagcagggggcagggctcagtgacatc
tcagctcaggtgcagcagtatcagcagttcctggacgcgtcacgggcgctgcctgagttc
ccagagttggatctgcaggacggacctcttccagacgggatcattccagaacacatcaca
gccttccaacagctctacagggaacactgtgaggccattctcgatgtgatggtgaacctg
cagttcactctggtggagacactgtggaaaaccttctggaggttcagcgagagcatcgac
gcagacacactcagcgttcatggtgagtcagaggagcgtctacctaagtggtacctggtg
gtgctgtgtaagtaccagcctgttcttcactggaccagagactgtgacaacacactgtac
caggccctggtggagatcctcatacctgacgtactacgacccatccccagtgccttaact
caagccatccgtaactttgccaagagtctggagagctggctgaccagcgccatgatgaac
ataccagaggagatggtccgcatcaaggtggtgtgtgcgggggcgtttgcccagacgctg
cggcgctacaccagtctaaaccacctgacccaggcagccagggccgtcctccagaacaca
gcccaggtcaatcagatgctgagtgacctcaacagggttgacttcaccaacgtacaggag
caggcgtcgtgggtgtgtcgttgtgatgatggtgtggtccagaggttggagcaggacttt
aagcagacgttacaacaacataactctctggagcagtgggctgcctggttggacggcgtg
gtctcccaggtcctaaagccctaccaacacagccctgcagccttccccaaggctgccaag
ctcttcctgctgcgatggagcttctacagttccatggtgatcagggacttgactctgcgt
agtgctgccagcttcggctccttccacctgatcagactgctttatgatgagtacatgtac
tacctgatagaacacagagtggcccaggctaaaggagagacacccatcgctgtcatggga
gagtttgccagtgtgggcaggagtctgaactttcaggatcctgataaagatgaggaagat
gatgaggaggaggagagtgatgaagagggggtagagatgaccatgccgtctaactccgct
ggtctgggagagggggagtcgtcactggagccacccatcaagctagccaggactgacccc
tga
DBGET
integrated database retrieval system
