Coregonus clupeaformis (lake whitefish): 121534628
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Entry
121534628 CDS
T08357
Symbol
shhb
Name
(RefSeq) tiggy-winkle hedgehog protein
KO
K11988
sonic hedgehog
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
121534628 (shhb)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
cclu01002
]
121534628 (shhb)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cclu00536
]
121534628 (shhb)
Peptidases and inhibitors [BR:
cclu01002
]
Cysteine peptidases
Family C46: hedgehog family
121534628 (shhb)
Glycosaminoglycan binding proteins [BR:
cclu00536
]
Heparan sulfate / Heparin
Morphogens
121534628 (shhb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HH_signal
Hint
Peptidase_M15_3
Hom_end_hint
Intein_splicing
Vint
Ribosomal_S6e
Motif
Other DBs
NCBI-GeneID:
121534628
NCBI-ProteinID:
XP_041697137
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All DBs
Position
21:complement(17332708..17335668)
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AA seq
415 aa
AA seq
DB search
MDVMLILIRIALVGFICLFLASAGLACGPGKGYGKQRHPKKLKPLAYKQFIPNVAEKTLG
ASGKYEGKITRNSERFKDLTPNYNPDIIFKDEENTNADRLMTQRCKDKLNSLAISVMNQW
PGVKLRVTEGWDEDGHHFEDSLHYEGRAVDITTSDRDKSKYGMLSRLAVEAGFDWVNYES
KAHIHCSVKAENSVAAKSGGCFPGSASVLLEDGRSKLVKELEVGDKVLAADKEGHIVSSD
FLMFLDRDPVSRREFYVFETEKPNRKLRLTPAHLVFITNNVTDDDMTAVFASNVKPGQQV
FVVDEALDHLKAVTVERIYVEEYEGSYAPVTSQGTIIVDHVLASCYAVIEDHKWAHWAFA
PVRLGHALMSLTGLVKKREDIRQRDGIHWYSDILYHIGTLLLDRNSFHPLGMSQS
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atggacgtgatgcttatactgataagaattgcgctcgtgggcttcatctgtctgtttcta
gcatccgctgggttggcctgtggtccaggcaagggatatggaaaacaaagacatccgaaa
aaactgaagcctttggcttacaagcagttcattcccaacgtggcggagaagacccttggg
gccagtggcaaatacgaagggaagatcacaaggaactctgaaagatttaaagacctgaca
ccaaactacaatcctgacattattttcaaagatgaggaaaacactaatgctgacagactt
atgacacagagatgtaaggacaaactgaactctttggctatttcagtcatgaatcagtgg
ccgggagtgaagctgcgcgtgacagaaggctgggacgaggatggacaccatttcgaagac
tctttacactatgaaggaagggctgtggatatcaccacctctgacagagataagagcaaa
tatggaatgctatccaggctcgcggtggaggcaggattcgactgggtcaattatgaatcc
aaagcccatattcattgttctgtgaaagcagaaaattcagttgctgcaaagtcgggtggc
tgcttccctggatccgcctcagttctcctcgaggatggtcgaagcaagctggtaaaagaa
ctggaggtgggcgacaaggtgttagcagcagacaaagaaggacatattgtgtccagcgat
ttcctcatgtttttggaccgagatccagtgtcaagacgagaattttatgtttttgaaact
gagaagcccaaccgaaagttaagactgacgccggctcaccttgtcttcatcaccaataac
gttacggatgacgatatgactgcagtgtttgccagtaatgtaaaacctgggcaacaggtg
tttgtggtggacgaggccctagaccacctgaaggcagtcactgtggaaaggatttacgtg
gaggaatacgagggatcttatgccccagtaacctcacaaggaaccatcatagttgaccat
gttttggcgagctgttacgcggtaatcgaggaccacaaatgggcgcactgggcctttgcg
ccagtcaggttggggcacgcgttgatgtctttaacaggtctagtcaaaaagcgcgaggac
atacgtcagagagatggaatacactggtactcagacattctataccacatagggacattg
ctgctggacagaaactcctttcatcctcttggaatgtcgcaaagctga
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