Coregonus clupeaformis (lake whitefish): 121535027
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Entry
121535027 CDS
T08357
Name
(RefSeq) probable ATP-dependent DNA helicase HFM1 isoform X1
KO
K15271
ATP-dependent DNA helicase HFM1/MER3 [EC:
5.6.2.4
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cclu03036
]
121535027
Enzymes [BR:
cclu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
121535027
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Meiosis-specific proteins
Others
121535027
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
Helicase_C
ResIII
DEXQc_Suv3
Motif
Other DBs
NCBI-GeneID:
121535027
NCBI-ProteinID:
XP_041697628
LinkDB
All DBs
Position
21:19374311..19413790
Genome browser
AA seq
1558 aa
AA seq
DB search
MLDSEDCTLSLDNLFFERPVVHKVKPLCQEQSFWQLEPPPSLSQIPATQDIQKESEGLSS
FSFSQKSNKFLPHLKRAVDGDGFTPKNTKLHQNTSDGGKEPEAQGGCALWAREDFMNKSQ
DTTKVSRGRTKTPQDSGHALEQQHFPLFSQSPPLRRSLFKPPSGQVLKKSANSNRGLNQA
RPRVQQTFNQVSMATEPRLANQSAAGPSPLTSLGPPKAWGPPQKTQDKGTKRAHVLPMTP
QALHIQSTSGPGILRPISEIPAKFRSVFKEFPYFNYVQSKALDDVLYTGKNFVACAPTGS
GKTVLFELAIIRLLMETTDPLRNIKAVYMAPIKALCSQRFEDWKKKFGPLGLSCKELTGD
TEIDDFFEIQDAHIIMTTPEKWDSMTRKWRDNCLLQLVRLFLIDEVHVVKDPMRGATLEV
VVSRMKAVHAYRAAQNPQEDLSMRFVAVSATIPNIKDIADWLCDDGDPATCLEMDESHRP
VKLRKVVLGFPCSSNQNEFKFDLSLNYKMANIIQTYSDQKPTLVFCSTRKGVQQSATVLA
KDARFIMSIEHKQRLMKYANSLLDSKLRDLVSFGVGFHHAGVDVSDRKGIEEAFTMGDLP
VLFTTSTLAMGVNLPAHLVVIKSTMHYIGGACEEYSEADMLQMIGRAGRPQFDTSATAVI
MTKTQTKDKYMQFMNGAEIIESSLHSHLVEHLNAEIVLHTISDVNMALDWIRSSFLYIRA
LKNPKHYGFSIDLDRCGIEAKLQELCLKNLNSLASIGLISMDEDVNIKATEAGRLMARYC
VAFDTMKQFSKVAGTETLPELIELMAKGREFTDVQLRVNEKRTLNTLNKDKNRITIRYPM
EGKIKNKEMKVNCLIQAQFGSIPIQEFGLAQDTGRIFRNGVRLSRCLAEFLNQRSKTGFS
ALLNSLILAKCFRAKLWENSPYVSKQLEKIGLTLSTAMVNAGLTTFNKIEQTNARELELI
VNRHPPFGNQIRDAVINLPKYEVSLEQLPRYNVATAEIVVTVNVKNHEQLLSKRTTHDHH
YVTMIIGDCDNNVVFLQKLTDLMLLKSGSWSKKIEVAKAFKGEEISVNLISSEYVGLDIQ
QKFSAFYSGPKRYGGESLTPEQHNTMQIAQANAQRSQGATQRIQPTGQQTQATAQKRNST
STEKGSSQPDLGKRQCNHFCKNKDQCGHDCCQNGVTVVLKRPMNQHSSFSSYLQDLKTRS
DTLTDTPVKRLKMRKSGGTGAANIQQFSYTPQPILPPACRYVGNRYGASAIQQSVESAED
FATPQEMAYLENYGHEYNDYLEDIYQTMGEVEPPPIQTPTESQSPSMWRKPSAYNGGSFS
HSTPQSQGRGYPQSQVPSQNQCRGYPQSHSIPQSQSRSYSPSPIVDLTDDSSFISSSHTP
SVTFDLGDETFDLGDEWDDWDDFDDDNLVHASETSCTTVAKTQWVDRDRLKGHSTPLPST
YVQPKPRFTVSSAPLSSTSPVVPQMAATSLPVRLHNLQASALWSHSNNKATRAFSEPFVK
APSFSKQTDTSMALLGGQFEFFSKTTTPNNDNVTGKRLQGEDNSKEVEAFMGIFAGLF
NT seq
4677 nt
NT seq
+upstream
nt +downstream
nt
atgttggactcagaagactgcactttgtccctggataacctgttctttgagaggccagtt
gtccacaaagtaaagccactttgtcaagagcagagtttttggcagttggaaccccctccg
tccctctcccagatcccagccactcaggacatccagaaagagtcagagggtctttcatca
ttcagtttctctcagaagtccaacaaattccttccccatttgaaaagagcagttgacggt
gatggtttcacacccaagaataccaaattacatcagaataccagtgatggaggaaaagaa
cctgaagcacagggcgggtgtgccctttgggctcgggaagacttcatgaataaatcccag
gataccacaaaggtcagcagaggtcgaactaaaaccccacaggattctggtcatgcactg
gagcagcaacatttcccactgttcagccaaagcccacctctacggagaagtttgttcaaa
cctcccagtggtcaggtgttgaagaaaagcgcaaactcaaacagaggcctcaaccaggca
agacccagagtgcagcaaactttcaaccaggtttccatggcgacagagcctcggctggca
aaccagtcggcagcaggccccagccccctcaccagtctgggcccacctaaagcctgggga
ccaccacagaagacacaggacaagggcaccaagagggctcatgttctccccatgacaccc
caagcccttcacatacaaagtacttctgggcctgggatactccgaccaatctctgaaatc
cctgctaaatttagatctgtcttcaaagagttcccttacttcaactacgttcaatcaaaa
gccctagatgatgttctatacacgggtaagaactttgtggcttgtgctcctacgggctct
ggtaagactgtgctttttgagttggccatcatccgcttactgatggagaccacagatccc
ttgagaaacatcaaagctgtgtacatggcccccatcaaagctttatgcagtcagcgcttt
gaggactggaagaagaaatttgggcctctgggcctgagctgcaaggagctgactggagac
acggagatcgacgacttctttgagattcaggacgcccatatcatcatgaccacacctgaa
aaatgggacagcatgacgaggaagtggagggataactgcctgctgcagttggtccggctg
ttccttattgacgaggtccacgtggtgaaggaccctatgcgtggagcaacactagaggtg
gtggtgagcaggatgaaggcggtccatgcctaccgtgcagcacagaacccccaggaggac
ctctccatgagatttgtggctgtctctgccaccatccccaatatcaaggatatcgcagac
tggctgtgtgacgacggagaccctgctacttgtctggagatggatgagagtcacagaccg
gtgaagctgaggaaggtagtgctgggtttcccctgcagcagcaaccagaatgagttcaag
ttcgacctgtcactcaactacaagatggccaatatcatccagacctattcagaccagaaa
ccaacacttgttttttgttcgacaaggaaaggagtccagcagtcagccactgttctggcc
aaggatgccaggttcatcatgagtattgagcacaaacaaaggttgatgaagtatgcaaac
tctctcctggactcaaaactcagagacttggtgtcgtttggggttggtttccaccacgcc
ggagttgacgtgtcagacaggaaggggatagaggaggccttcaccatgggagacctgcct
gtgctgtttacaactagtactctggcgatgggggtgaacttgccagcccacctggtggta
atcaagtccaccatgcactacatcgggggcgcctgtgaggagtacagcgaggccgacatg
ttgcagatgattggccgagcaggccggccacagtttgatacatcagcgaccgcagtgatc
atgaccaagactcaaaccaaagacaagtacatgcagttcatgaatggagcagaaatcatc
gagagcagcctgcatagccacctggtggagcacctgaacgctgagattgtcctccacacc
atctcagatgtcaacatggccctggactggatccgttccagcttcctctacatccgagct
ctgaagaaccccaaacactatggtttttccattgacttggaccgatgtggaatcgaagcc
aaattgcaagagctctgtctgaagaacttgaattccctggcctccattggtctgatctcc
atggatgaggatgtcaacatcaaagctacagaggccggcaggctgatggcaaggtactgt
gttgcgtttgacaccatgaagcagttcagcaaggtggctggcactgagaccttacctgag
ctgatagaattgatggcgaagggcagagagttcactgatgtacagctgagagtgaacgag
aagagaaccctgaacacattgaacaaggacaagaacaggatcactatcaggtatcccatg
gagggaaagatcaaaaacaaagagatgaaggtgaactgcttgattcaagcccagtttggc
tccattccaatccaggagtttggacttgcacaggacacagggagaatcttcagaaatgga
gtccgactcagcagatgcttggcagagttcctaaaccaacgctccaagacaggcttctct
gctctactcaactccctgatactggccaagtgcttcagggccaagctgtgggagaactct
ccttacgtctcaaagcagctggagaaaatagggttgactctgtcgacggccatggtgaac
gctgggctcaccaccttcaacaagatagagcagactaacgccagggaactggagctgatc
gtcaacagacatcctccatttggaaaccaaatcagagacgctgtcatcaatctacccaag
tatgaagttagtttggagcagcttccaagatacaacgtcgccaccgcagagattgtcgtg
accgtgaatgtgaaaaaccacgaacagctgctgtcaaagagaaccactcatgaccaccac
tatgtcacaatgatcatcggggactgtgacaacaacgtggtcttcctgcaaaaactgaca
gacttgatgctgttgaagtcaggaagctggtcaaagaagatcgaagtggcgaaagccttc
aaaggagaggagatcagcgtgaatctaatcagctcagaatacgtggggttggacattcag
cagaagtttagtgccttctactctggaccaaagaggtacggaggtgaatcactcacacct
gagcaacataacacgatgcaaatagcacaggctaacgctcagagatcacagggtgcaaca
cagagaatacagccaacaggtcagcaaacacaggctacggcacagaagagaaactccaca
tccacagaaaagggttcctcacaaccagatctaggcaaaagacaatgtaaccacttctgc
aaaaacaaggatcagtgtggccacgactgctgtcaaaatggagtgacggtggttctgaag
aggccgatgaatcagcattcgagtttctcctcctatctccaagacctgaagaccaggagt
gacacactgacggatacaccagtcaaacgcctcaagatgagaaagagtggtgggactggg
gctgcgaacattcagcagttctcttatacgcctcagcccatcttaccacccgcttgcagg
tatgtaggtaatcgttatggcgcttcagcaatacaacagagtgtggaatcagctgaggac
tttgcaacgccccaagagatggcatatcttgagaactatggccatgagtataatgactac
ctggaagacatatatcagacaatgggagaagtggaaccaccacctattcaaacccctaca
gagtcacaaagtccttcaatgtggaggaaacccagtgcctacaatggagggtcgttcagc
cacagcaccccccaaagccagggcaggggttacccccaaagtcaggttccctctcaaaac
cagtgtcggggttaccctcagagtcacagcatcccccaaagccagagcaggagttactct
ccgagtcccatcgtagacttgaccgatgacagcagcttcatttcatcgtcacacaccccc
agcgtgacctttgacctgggagacgagacctttgacctgggagacgaatgggacgactgg
gatgattttgacgacgacaacttggtgcacgccagcgagacatcatgcaccactgtagct
aaaactcagtgggtggaccgtgacaggctgaaaggtcactcaacaccactaccatccact
tatgtacaacccaaaccccgcttcactgtgtccagtgccccactcagttcaacctcccca
gttgttcctcagatggcagctactagtctcccagtcagactacacaacctccaggcttct
gctctctggagccactctaacaacaaggccacaagggcattcagtgaaccctttgtgaaa
gcaccctccttctcaaaacagactgacacaagcatggctctgctgggaggacagtttgag
ttcttctcaaagacgactaccccaaacaatgacaatgtgactggcaaaaggctccaggga
gaggacaacagcaaggaagtggaggcattcatgggtatatttgctggactattctag
DBGET
integrated database retrieval system
