Coregonus clupeaformis (lake whitefish): 121535092
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Entry
121535092 CDS
T08357
Name
(RefSeq) retinoic acid receptor RXR-gamma-A isoform X1
KO
K08526
retinoid X receptor gamma
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03320
PPAR signaling pathway
cclu04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
121535092
03320 PPAR signaling pathway
121535092
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121535092
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
cclu03310
]
121535092
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
121535092
Nuclear receptors [BR:
cclu03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
121535092
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
Nuc_recep-AF1
zf-C4
tRNA_bind_3
Motif
Other DBs
NCBI-GeneID:
121535092
NCBI-ProteinID:
XP_041697735
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All DBs
Position
21:complement(22322627..22379184)
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AA seq
505 aa
AA seq
DB search
MRIITGVEDSRGKMECDIIDISQSELEMYGNYQSLMLLPGFDNSSVQVSHLSSTPSQPLS
IMVGPPHPHHHPHHHHHPSVISAAVNPERPRPSPISTLGSPFNGLCGSPYSVITSSSLGS
PGVSMPHTPTIGFSTLSSPQINSLNSVSSSEDIKPPPGLAGLGHMNSYGCMSPGSMSKHV
CAICGDRSSGKHYAVYSCEGCKGFFKRTIRKDLTYTCRDSKECLIDKRQRNRCQYCRYQK
CLAMGMKREAVQEERQRGRDKSDNEVESTSSFNGDMPVEKILDAELAIEPKTDAYMEASA
GNSTNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRS
VTVKDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKTELGCLRAIVLFN
PDAKGLSNPTEVEALREKVYASLESYTKHRYPDQPGRFAKLLLRLPALRSIGLKCLEHLF
FFKLIGDTPIDTFLMEMLEAPHQIT
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagaatcataacaggtgtcgaagattccagaggaaaaatggaatgcgacataatagac
attagccaatcagagttggaaatgtatggaaactaccagtccctgatgctccttcctggc
tttgacaattcttctgtgcaggtctcccacctgagctccaccccctcacagccccttagc
atcatggttggcccccctcaccctcaccaccacccccatcaccatcaccacccctccgtc
atcagcgcagccgtcaaccctgagcggcctcgcccatcccccataagcaccctgggctcg
ccgttcaatgggctgtgcggctcgccgtactccgtcatcacgtcatcctctctgggctcg
ccaggtgtctccatgccccacacgcccaccatcggcttcagcacgctctccagcccacag
ataaactctctgaacagtgtgagcagcagtgaggacatcaagcctcctccaggcctggct
ggactgggtcacatgaacagctacggctgcatgagcccagggtccatgtccaagcatgtc
tgtgccatctgtggggaccgatcttcagggaaacactatgccgtgtacagctgtgaaggc
tgtaaaggcttcttcaagagaaccatcaggaaggacctcacctacacgtgtcgagacagc
aaggagtgcctgatcgataagcgccaacgcaaccgctgccaatactgccgctaccagaag
tgtctggccatgggcatgaagagagaagcggtgcaggaggaacgtcagcggggccgggac
aaaagtgataacgaggtggagtcaaccagtagtttcaacggggacatgccggtcgagaag
atattggacgcggagttggccatcgaacccaagactgacgcttacatggaggccagcgca
ggcaactctacgaacgacccggtcaccaacatctgccaggcagcagacaagcagctattc
accctggtggagtgggccaaaaggatcccccacttctctgagctacccctggacgaccag
gtcatcttattacgagcaggctggaatgagctgctcatcgcctcgttctcccatcgctct
gtgacagtgaaggatgggatcctcctggctacgggcctccacgtccaccgcagcagcgcc
cacagcgcaggagtgggctccatctttgacagagtgctgacggagctggtgtctaagatg
aaagacatgcagatggacaagactgagctgggctgcctcagagccatcgtcctcttcaac
ccagatgccaagggcctgtctaatcctacagaggtggaggccctgagagaaaaggtgtac
gcctcactggagtcctacactaaacacagatatccagatcagcctggcagatttgccaag
ctgctgctgcgtctgcctgcactgcgctccatcggcctcaagtgtctggagcacctcttc
ttcttcaagctgataggggacacgcccatagacaccttcctcatggaaatgctcgaagcg
ccgcaccagatcacatga
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