Coregonus clupeaformis (lake whitefish): 121535131
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Entry
121535131 CDS
T08357
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 7
KO
K14437
chromodomain-helicase-DNA-binding protein 7 [EC:5.6.2.-]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cclu03036
]
121535131
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
121535131
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
Helicase_C
BRK
Chromo
ResIII
DEAD
HTH_CHD1_Hrp3
HDA2-3
MUN
Tfb4
Motif
Other DBs
NCBI-GeneID:
121535131
NCBI-ProteinID:
XP_045062198
LinkDB
All DBs
Position
21:complement(24315969..24399693)
Genome browser
AA seq
3226 aa
AA seq
DB search
MADPGMLSLFGDDANLFSDGLEGLGDCGFPQGQPNPMGQQMPHEHQGYGSLSSNSLHHTS
QAVPGQPKMGHPYDPFAGYEQQQGRMLGNGPAVNGMASPHSRYHNNPQQPGGGHHVYPGA
QGDGLGQPFPDGGAVWGPQAGPGQSRPPFQQQQAAAQAPSHQQHGPSGPQGHGHQMGPYM
GRADYATMQGHPGQTQTPPRVNHFPQGMGQEPNHYMGHVGLQQNPSMTGPPMRHPAQQQQ
PPQQFLHRPGQGPVHPQEPMASHTPRFPHSPSRQQQVLAGRPHQNMGFNMHGQAAPPGAV
TSSGQYPPYPQYGNLNQGLAGTAGMSPGMSLSSTNNNSNASGPMGPAQVPRYPNVGGPPQ
RYPGPQVHQQPVHPNQITGQPMHPSQPMHPSQAQATPQQQPHLPTPPQGSYGSPPSMSPM
RGMGTPGGTPPPQQGRPSSAGLAPEVGGYPGVPLQAPSPMAPPQRNPTPMGAQQPHPHLQ
HHPQHPSHPQQHPHMPPGQQLYPGMPPNQRVPLGQVRPPGPMAHGEPPGPQDQRLLPPQQ
QAPRPGQQLQPPPMAFQQLQQVHPAQAALPPSQAQTHLAGPHHQSSSPNQPPWVPPPHQS
PPTLQKVPHIQHSPSDPSSETTASDRTSASGANLQPAYRDQQPTDTEQKPKKKKKKKAKV
IEDEKEGEGEKKQKKKKKGVIEEGDEERKPEVGDRCGVEVDPLTRALEDSPAVEKKKTKK
KPKEKEPKEPKEPKPPKTPKTPKTPKEPKDKKAKSTTPKAKTPKKPSSSTKKVEAAEDSG
SSVNKETKRKREPSVNSDVEKSPTPPSDEEDDDGVQKRRSSRQVKRKRYTEELEFRISDE
DNDGDDSPAPKSPSNNSEQQEVVETEGPVVEKIMAMRLGKKEVRHGIGEEMEVEEFYVKF
KSFSYLHCRWADLEELEKDKRIHQKVKRFRAKQALATFVTEMDDEPFNPDYVEVDRVLDV
SESTDENGVPVNLYLVKWCSLPYEDSTWELKADIDQAKIEEYEAVVAREPKTKRVERPPT
DDWQKSESSRDYKNDNALREYQLEGVNWLLFNWYNTRNCILADEMGLGKTIQSITFLYEI
YLKGIHGPFLVIAPLSTIPNWEREFRTWTELNVIVYHGSQASRKTIQAYEMNYRDAQGRV
IKGAYKFHAVITTFEMILTDCPELRSVPWRCVVIDEAHRLKNRNCKLLEGLKMMDMEHKV
LLTGTPLQNTVEELFSLLNFLEPERFPSENTFMQEFGDLKTEEQVQKLQAILKPMMLRRL
KEDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFSFLSKGGPGGGGGAWGGGGAQVPN
LLNTMMELRKCCNHPYLINGAEEKILEDFRENHHAEMAQFHLQAMIQAAGKLVLIDKLLP
KLKAGGHRVLVFSQMVRCLDILEDYLIQKRYPYERIDGRVRGNLRQAAIDRFSRPDSDRF
VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKIYRLITRNSY
EREMFDKASLKLGLDKAVLQSMSGRENAANGVQQLSKKEVEDLLRKGAYGALMDEEDEGS
KFCEEDIDQILQRRTQTITIESEGKGSTFAKASFVAAGNRTDISLEDPDFWQKWAKKAEL
DMDAINGRNTLVIDTPRVRKQTRHYSSMKEDELAEFSELESDGENEKPLTKPRRPQDRAQ
GYPRSECFRVEKNLLVYGWGRWGDILSHGRFKRPLREQDVETICRALLAYCLLHYRGDEN
IKSFIWDLITPTEDGQSRTLTNHSGLSTPVPRGRKGKKGKPAPPAPPQLPRAEWLASCNP
DLLLQEDSYKRHLKHHCNKVLLRVRMLYYLRQEVVGDQADRILEGTDSSEMDIWIPQPFH
AEVPADWWDSESDKSLLIGVFKHGYEKYNSVRADPALCFLERVGMPDAKAIAAEQRGADM
MADGPEGEDEDPEYKPLRMPFKDEMDDFTNSPLDDKEEAMDVESGESKLGENGAGSRGAG
RLYWPAASALTARLRRLITAYQRTHKREQLRQEAMARPDGRRRRRPREQLLSMVTDGRGA
YVQEGGAFMAEGSPYMATGKAFIPEATALLAEGGAFFKERRQRWTRREEADFYRVVSTFG
VIYDTARQRFDWTQFRAFARLDKKTDESLEKYYFSFVAMCKRVCRMQVKTDTELPDPTLI
IDPITEERASRTLYRIELLRRIREQVLPHPLLGERLRLCQPSSDLPEWWDCSRHDRDLLL
GASKHGVSRTDYHILNDPALGFLEAHRKFTKGGSAGVPQPPRDVAPSTASEQATAAAAAE
KPSHVKEEQEEVEGKEVKEEGDNDLPCTETEKPDKDEEMEGEETEKEVKAASPKKELKDE
KEKEEEEKGEDLKDEEDKEPKEEKMEVNGDADGETSKDAEPEKEDTPNEDIRDQDKKPEF
QEKPESSKASEDQETKKEEMAGKQKEGSPAKSPKSPKPVAEKGPEEEDEEKMEEDDKSEK
SSQADAGATSEQKNFDEESNASLSTTARDETRDGFCPEDGEPSAIQRTFSFSFWPKDRVM
INRMDNICEAVIKGKWPANRRQFFDIPGLLPGYPGPTASESPLQRRGLAELSMVAAAQAS
FSGSEDLTLSPQVNEDALSMSLPKQRRRRRRKVEIEAERAAKRRNLMDMVAQLRESHQAE
SQSQAMDLTKGMHHHHKSASSLAGYSSSSMVPSATLKAQMELLQAATPSRHRANGSLAEA
DLPTRRRRGRRKNVEGLELLFINNKRGATEDSEGTKASVEGVQMPPRSHRHNIPSPSASA
RVPSVSAMEDGEAGTPSDKDLRDWLRQHPTYTMDMPTAYTPKSEELLLSSQFPKPKQKRH
RCRNPNKIDINTLTGEERVPVVNRRNGRKMGGAMAPPMKELPRWLLENPEFAIAPDWTDI
VKQSGFLPEAMFDRLLTGPVVREEGVRRRGRRPKSEIAKATVAAAAAQAQAASSSGLNPL
LMNGLFGGMDLTSLQGLQSFQSLQLQLMGFPGMGGTDAKHASAMLPLMLPGMAGMGGLPN
MFGLGGLFGNNLAAASAAATPAAASNGTNDEGDSDEMSKRDEGEGGEEGDEDKEKETGVE
AESSKANGDAAALNAAAAAMAASGMSANSLAFNPFLLSTMAPGLFSPYMFLPPGLGGLTM
PGFPPTTLADLQSAMAGAMGAASGAQGQEKEPSQAGLAPDRPAAATADPETAEDSDSAES
LEKTAESSALEDEASALAEEADSPEDLAAEDEEEGEDAPEEKSDGN
NT seq
9681 nt
NT seq
+upstream
nt +downstream
nt
atggccgacccggggatgttgagcctgttcggggacgacgccaacctgttctcggacggg
ctggagggcctgggggactgtggcttcccccagggccagcccaacccaatggggcaacag
atgccccacgagcaccagggctatgggtcgctgtcctccaactccctccaccacacctcg
caggccgttcccggacagcccaagatgggccacccctacgaccccttcgcgggctacgag
cagcagcagggccggatgttgggcaacggccccgccgtcaacggcatggcatccccacac
tcgcgctaccacaacaacccccaacaacctggaggggggcaccacgtctaccccggagcg
cagggtgacgggctcggccagccattccctgacggaggagccgtgtggggcccccaggct
ggccccgggcagagcaggcctccattccagcagcaacaggctgccgcccaggccccctcc
caccagcagcacggcccctcagggccccagggccacggccaccagatgggcccctacatg
ggccgtgccgactatgccaccatgcagggccaccctggccagacccagacgccccctagg
gtcaaccacttcccccaaggtatgggccaggaaccaaaccactacatgggccacgtgggg
ctccagcagaaccccagtatgacaggtccccccatgcgccacccggcccagcaacagcag
cctccccagcagttcctccaccggcccggccagggccccgttcacccccaggaacccatg
gcctcccacacccctcgcttcccccacagcccctctcgccagcagcaggtcctggccggg
aggccccaccagaacatggggttcaacatgcacggccaggctgcaccccctggtgctgta
actagctcagggcagtaccccccctatccccagtacggcaaccttaatcagggattagcc
ggcactgcagggatgagtcctgggatgagcctcagcagcaccaacaacaacagtaacgcc
agtgggcccatggggccagcccaggtcccgcgctaccccaacgtaggggggcccccacag
cgctaccctggcccacaggtacaccagcagcctgtccaccccaaccaaatcaccggacag
cctatgcacccttcccagcccatgcacccctcccaggcccaggccaccccccaacagcag
ccccacctccccacaccacctcagggatcctacggctctcccccctccatgtcccccatg
aggggcatgggaaccccggggggaacacctccgcctcaacagggccgcccctctagtgcc
ggcctggctccagaggtagggggctacccaggagtcccactccaggcccctagccccatg
gccccccctcagagaaaccccactcccatgggtgctcagcagccacacccccacctgcaa
caccaccctcagcacccctcccacccacagcagcacccccacatgcccccgggccagcag
ctataccccggcatgccccctaaccagcgagtcccactcggccaggtgagacctccaggt
cccatggcccacggtgagcctccaggaccccaggaccagcggctgctccctccccagcaa
caggctcccagacctgggcagcagctgcagcctcctcccatggccttccagcagctgcag
caggtgcaccccgcccaggccgctttgcccccgtcacaggcccagacacacctggccggc
ccccaccaccagagctcctcgcccaaccagccaccctgggtgccgccaccacaccagtcg
cctccaaccctccagaaagtgcctcacattcagcattccccgtcagatccatcatctgag
acgacagcttccgacaggacatccgcctcaggggcgaacctccagccagcctaccgtgac
cagcagcccacggacacagagcagaagccaaaaaagaagaagaagaagaaagccaaggtg
attgaggatgagaaggaaggagagggggagaagaagcagaaaaagaagaagaaaggagtt
atagaggaaggtgacgaggagaggaagccggaggtcggggaccgctgcggggtggaggtt
gaccctctgacacgcgccctggaggattcgccggcggtggagaagaagaagaccaagaag
aaaccaaaggagaaggagcccaaggagcctaaagagcccaagccgcccaagactccgaaa
acgcccaagacccccaaagagcccaaggacaagaaggccaagagcaccacccccaaggcc
aagacgcccaagaagcccagcagcagcactaagaaggtggaggcagcagaggacagtggc
agcagtgtgaacaaggagaccaagaggaagagggagccctcggtcaactccgatgtggag
aagtcacccacaccaccctccgatgaggaggacgacgacggtgtccagaagcgtcgctcc
agtcgtcaggtgaagaggaagcgctacacagaggaactggagttcaggatctcggatgag
gacaatgatggagacgactcccccgctcccaagtccccctccaacaactctgaacagcag
gaggtggtggagacagaggggcctgtggtggagaagatcatggccatgcgcttggggaag
aaagaggtgaggcatggaatcggggaggaaatggaagtggaagaattctatgtgaagttc
aagagcttctcctacctgcactgtcgctgggcagatctggaggagctggagaaggacaaa
aggatccaccagaaagtcaaacggttcagggccaaacaggccctcgccacgtttgtgacg
gagatggatgacgagcctttcaacccggactatgttgaggtggaccgggtcctggacgtg
tcagagagcacagatgagaacggagtgcctgtgaacctgtacctggtgaagtggtgctcc
ctgccctatgaggacagcacgtgggagctgaaggccgacatcgaccaggccaagatcgag
gagtacgaggccgtggtggcccgcgagcccaagaccaagcgggttgagcgacctcccacc
gacgactggcagaaatccgagagttccagggattataaaaacgacaacgcactcagggaa
taccagctggagggagtgaactggctgctcttcaactggtacaatacacggaactgcatc
ctagcagatgaaatgggcctgggcaagaccatccagtccatcacattcctctatgagatc
tacctgaaggggatccacgggcccttcctggtcatcgcccccctctccaccattccaaac
tgggagagggagttccgcacctggactgaactcaacgtcatcgtctaccacggcagccag
gccagccgcaagaccatccaggcctacgaaatgaactaccgcgacgcgcagggtcgtgtg
ataaagggagcgtacaaattccatgccgtcatcaccacgtttgagatgatcctgacagac
tgcccggagctgcgcagcgtcccgtggcgctgtgtggtcatcgacgaggctcaccgcctc
aagaacaggaactgcaaactgctggagggactcaagatgatggacatggagcacaaggtt
ctgctgacaggaacacccctgcagaacactgtggaggagctcttcagtctgctcaacttc
ctggagcctgaacgcttcccctcagagaacaccttcatgcaggagtttggagacctcaag
actgaggagcaggtccagaagctgcaggccatcctgaagcccatgatgctgcgacgtctc
aaggaggacgtggagaagaacctggcccccaaggaggagaccatcatcgaggtggagctg
accaacatccagaagaagtactaccgggccatcctggagaagaacttctcatttctgtct
aaaggaggaccaggaggaggaggtggcgcatggggaggtggaggggctcaggtccccaac
cttctcaacaccatgatggagttgaggaagtgctgcaaccacccctacctcatcaacggt
gcagaggagaagatcctggaggacttccgtgagaaccaccatgccgagatggcccagttc
cacctgcaggccatgatccaggcggcgggcaagctggtgcttatcgacaagctgctgccc
aagctgaaggctggtggacacagggtcctcgtcttctcccagatggtgcgctgcctggac
atcctggaggactacctcatccagaaacggtacccatacgagcgtatcgacggccgcgtg
aggggtaacctccggcaggcagcgatcgaccgcttctctcgaccggactctgaccgcttt
gtcttcctgctgtgtacccgggccggcggcctgggcatcaacctgactgctgcagacacc
tgcatcatctttgactcggactggaacccccagaatgacttacaggcacaagccagatgc
cacaggattggccagagcaaggcagtgaagatctacagactgatcaccaggaactcctat
gagagggagatgtttgacaaggccagcctcaagctgggccttgacaaggctgtgctgcaa
tccatgagtggccgagagaacgcagccaatggggtgcagcagctgtctaagaaggaagtg
gaggacctcctccgtaaaggagcttacggagctctgatggacgaggaggacgaaggctcg
aagttttgcgaggaagacattgaccagatcctccagagacgaacccagaccatcaccatt
gagtccgagggcaaggggtccactttcgccaaggcgagcttcgtggccgctgggaacagg
acggacatttccctggaggacccagacttctggcagaagtgggccaagaaggcggaactc
gacatggatgccatcaatggacggaacaccctggtgattgacactccgagggtgcggaag
cagacacgccactacagctcaatgaaggaggacgagttggcggagttctccgagctggag
agcgacggcgagaacgagaagcccttgaccaaacccaggcggccacaagaccgagcccaa
gggtacccccgcagcgagtgcttcagggtggagaagaacctgctggtttatgggtggggt
cgctggggagacatcctgtcccacgggcgtttcaagcggcccctgcgggagcaagacgtg
gagaccatctgccgtgccctgctggcctactgcctgctgcactaccgtggcgacgagaac
atcaagagcttcatctgggacctcatcacgcccaccgaggatggacagagccgcacgctc
accaaccactccggtctgtctactccagtaccacggggtcgtaaggggaagaaggggaaa
ccagccccgcctgcccctccccagctccctagggcagagtggctggccagctgtaaccct
gacctgttactgcaggaggacagctacaagagacacctcaaacaccactgtaacaaagtt
ctcctgagggtccgaatgctctactatctgcgacaggaagtcgtcggtgaccaagccgac
cggatcctagagggaactgactcaagtgaaatggatatctggatccctcagcctttccac
gccgaggtccctgccgattggtgggacagcgagtctgacaaatcgctgctcatcggcgtc
ttcaaacacggctatgagaagtataactcggtgcgcgccgaccctgctctgtgtttcttg
gagcgggtgggcatgcctgacgccaaggccatcgctgcagagcagaggggggcggacatg
atggcagatggtccggagggagaggatgaggacccagagtacaagcctctccgtatgccc
tttaaagatgagatggatgacttcactaactctccccttgatgacaaagaggaagctatg
gacgttgagagtggtgaatctaaactaggtgaaaatggagcaggcagcagaggggctggt
cgtctgtactggccggcagcctcagccctcaccgcaagactccgccgcctcatcactgcc
taccagcgcacgcacaaacgagagcagcttcgccaggaggccatggcccggcccgacgga
cgccgccgccggcggccccgagaacagctcctctccatggtcacagatggacgaggggcc
tacgtgcaggagggcggagccttcatggcagaggggagtccttatatggccacgggcaaa
gcgttcattcccgaggcgacggctctcctggcggaaggaggggccttcttcaaagagagg
cgtcagaggtggaccaggcgtgaggaagctgatttttaccgtgtggtgtccacgtttggc
gttatctatgacacggcccgccagcgctttgactggacccagttcagggcctttgcccgg
ctggacaagaagactgacgagagcctggagaaatattacttctccttcgtggccatgtgc
aaacgggtgtgtcgcatgcaggtcaagaccgacacagagcttccagaccccaccctgatc
atcgaccccatcacggaggagcgcgcctcacgcaccctttaccgcatcgagctgctgcgc
cgcatccgcgagcaggtgctgccccaccccctgctgggcgagcgcctgcgcctctgccag
cccagctctgacctgccggagtggtgggactgcagcaggcatgaccgcgacctcctcctg
ggcgcctccaagcacggcgtgagccgcactgactaccacatcctcaacgacccagccttg
ggcttccttgaggcccacaggaagtttaccaaggggggatcggctggggtgcctcagccg
ccccgcgatgtagctccctctactgcctctgaacaggccacagctgctgctgctgctgag
aaaccctcccatgtcaaagaggagcaagaggaggtagaagggaaggaggtgaaagaggaa
ggtgacaacgaccttccgtgtactgaaaccgagaaaccagacaaggacgaagagatggag
ggagaggagacggagaaggaagtgaaggctgcgtctcccaagaaggagttgaaggacgag
aaagagaaggaggaggaagagaagggagaggacctaaaagacgaggaagacaaagaaccg
aaagaggagaaaatggaggtcaacggcgatgctgacggagagacttccaaggacgccgaa
ccagagaaagaagacactcccaatgaggacatcagggaccaggacaagaagccggaattc
caggagaaaccggagtcttccaaagcatcggaagaccaggaaaccaagaaggaagagatg
gcgggaaagcagaaagaagggagcccagccaagtctcccaaatctcccaaaccagtggct
gagaaagggcccgaagaggaggatgaggagaagatggaggaagacgacaagtctgagaag
tcctctcaagctgacgcgggtgccacctccgagcagaagaactttgacgaggagagcaat
gcctcactgagcaccacggccagagacgagacccgcgatgggttctgccccgaggatgga
gaaccctcagccatccagagaaccttctccttctccttctggccaaaggatcgcgtgatg
atcaatcgcatggacaacatctgtgaggcggtcatcaagggcaagtggcccgccaaccgc
cgccagttcttcgacatcccgggcctgttgcctggataccctggccccacggcgtccgaa
agccccctgcagaggcggggcctggccgagctgtcgatggtggcggctgctcaggcgagc
ttcagcggcagcgaggacctcactctctcgccacaggttaacgaggatgctctgagcatg
tcgttgccaaagcagcgtcgtcgcaggcggaggaaggtggagattgaggcggagcgcgcc
gccaagcgaaggaacctgatggatatggtggcccagctcagagagtctcaccaagctgag
tcccagagccaggccatggacctcaccaagggcatgcaccaccaccacaagtcagcgtcg
tccctggcgggctactccagcagcagcatggtgccttctgctaccctcaaggctcagatg
gagctgctgcaggcggccacgccttccagacatagggccaatggctcattggccgaggct
gacctgcccacccggaggaggcgaggccgcaggaaaaatgtggaggggctggagctgctg
ttcatcaacaacaagagaggagccacggaggattccgaggggaccaaagcatcggtggag
ggggtgcagatgcccccgcgttcccaccgccacaacattcccagtcccagcgcctccgcc
cgcgtcccttctgtcagcgctatggaggacggggaagctggtaccccctctgacaaggac
ctgagggactggctcagacagcaccccacatacaccatggacatgcctactgcatacaca
ccaaagagtgaggagttgcttctctcctcccagttccccaaacccaagcagaagcggcac
cgctgccggaaccccaacaagatcgacatcaacactctcactggagaagagcgggttccc
gtggtcaaccggagaaacggcagaaagatgggtggagccatggcccctcccatgaaggaa
ctgcccagatggctcctggagaacccagagtttgccatcgctcctgattggaccgacatt
gtcaagcaatcgggcttcctccctgaggccatgttcgaccgtctcctgactgggcccgtg
gtgcgtgaggagggcgtccgtcgtcgggggagacgccccaaatcagagattgccaaggcg
acggtggctgccgcggcagctcaggcccaggctgcatcctccagcggcctgaaccccttg
ctgatgaacggcctgtttggaggcatggacctcaccagcctgcagggcctacagagcttc
cagagtcttcagctgcagctcatgggcttccccggcatgggggggactgacgctaaacac
gcctcggccatgctgcctctcatgctgcctggtatggctggtatgggcggcctgccaaac
atgttcggcctgggaggcctgttcggaaacaacctggccgctgcctcggctgcagccacg
cccgctgcagcctccaatggcaccaacgacgagggcgattcggatgagatgtcgaagaga
gacgaaggggagggtggagaagagggggatgaggacaaggagaaggaaactggggtggag
gcggagtcgagcaaggctaatggggacgccgcggctctgaacgcagccgccgccgcaatg
gccgcctccggcatgtcggccaactccctggccttcaaccccttcctgctatccaccatg
gcccctgggctcttttccccctacatgttcctgccccctggcctgggaggtctcaccatg
cctggcttcccccccaccaccctggccgacctgcagagcgccatggctggagccatgggg
gctgcttctggagctcagggccaggagaaggagcccagccaggctggccttgccccggac
cgccctgccgccgctaccgcagacccagagacagccgaagacagcgactcagcagagagt
ctggagaagacggccgagtcgtcagccctagaagacgaggcctctgcattggctgaggaa
gccgactcgccggaagacctagcggccgaggatgaggaggaaggagaggatgcccctgag
gagaagagtgacggaaactaa
DBGET
integrated database retrieval system
