Coregonus clupeaformis (lake whitefish): 121535135
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Entry
121535135 CDS
T08357
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03008
Ribosome biogenesis in eukaryotes
cclu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
121535135
09123 Folding, sorting and degradation
03018 RNA degradation
121535135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121535135
03009 Ribosome biogenesis [BR:
cclu03009
]
121535135
03016 Transfer RNA biogenesis [BR:
cclu03016
]
121535135
03036 Chromosome and associated proteins [BR:
cclu03036
]
121535135
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
121535135
mRNA degradation factors
5'-3' decay
5' exonucleases
121535135
Ribosome biogenesis [BR:
cclu03009
]
Eukaryotic type
Pre-60S particles
RNases
121535135
Transfer RNA biogenesis [BR:
cclu03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
121535135
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Gene silencing
piRNA pathway
121535135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
121535135
NCBI-ProteinID:
XP_041697821
LinkDB
All DBs
Position
21:complement(24619798..24646218)
Genome browser
AA seq
1699 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDEDVHFRISEEKI
FADIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKALEKGE
VLPSEARFDSNCITPGTDFMARLQEQLKYFVNSKLSTDNAWKGVNVYLSGHETPGEGEHK
IMEFIRSENAKPGHNPNTRHCLYGLDADLMMLGLTSHEPHFSLLREEVRFGGKKNQKRIT
APEETTFHLLHLSLFREYIDYEFSEVKNKISFEYDLERIIDDWILMGFLVGNDFIPHLPH
LHINQDALPLLYRTYISVLPTLGGYLNENGHLNLGNFEKYLEKLSEFDREHFNEVFVDLK
WFESKVGNKYLNEAAGLAAEEAHCKDTRKKDLEDSLRLTTLDDGKDRAPGRGFEEDGEEE
DMFEAEFRQYKRTYYMTKMGVEVVSDEFLANQALCYVEGIQWILHYYYHGVQSWSWYYPH
HYAPFLSDVRNIAHLKLTFDIGKPFLPFQQLLGVLPAASKDLLPQSYRHLMTSENSSIIE
YYPLDFKTDLNGKQQEWEAVVLIPFIDERCLLAAMEPYNDHMTKAEKARNRHTECAVYSY
DTELDYPHTSTLPELFPNIMHCHVRVTPVPMDAWHVSLSHVARSVNSSQLYFLGFPTLQH
IRHKFYKKKHGVVVFQQSSRGENMILEIRPSKEDPTCGDVASLVLGCTVFVNWPHLEEAR
VVAVSDGESKFFLEEPAGVQKLYDRDSPPPTKVTYLSDKEQKDWLKDVQGITEHFSKRKG
IIVNETGVVLYAQLLAGRKYVPGQNRQVHLEKQWAKQIMPFAYQTIVKDIKAFDSSSTRF
NTLEELFPPTTTVFMVGNPYYGAMGEVQESSDVIKEGRVWVVFTVPCEPPMEALIQNQHK
YCVKYSPGYVLASRLGVTSYLVSRFSGSIFVGRGSKKNPHGEQKANVGLNLKFNKKNEEV
PGYTKRTQKEWLYSDAVEELMAEYLDRFSEVFDLVSRNSHDDVFYEDDIWPGEDENGAEK
VKEITSWLKTHPVADIARASCDLQILDKAIVERIEEEVEKAKVKKSSDKVRVTVKPHLLF
RPLEQQHGVVPDPDAEYHLFDRVVNVRESFSVPLGLRGTIIGIKAADREAEVLYEVVFDE
EFAGGLTIRCAVGHGYRLPPCALINLSHGGRVEQGFHKLTAIVKPQPASSHQHNKGQLVG
LNHSPRSPFISTQQQNGRQNILRTDTQDNKNSAHKASQKPQSKGKDEEFSNVWQSLQSSG
MPQKPPAHWQQNNSGKSAWGTGSPGQEGQFQGQQGRNQPQSQQQHPPKPGPAGSIRLLKR
NEDVNSLFPAQNATKKQTEFEELIANLKISKGNEPTPPPPAKEPTSQSEEPLSPQSFAMK
GTLALKEMLNIGSAPDSTSPASFNTQQQNRRRPTKKLAARMGDPVLPTAPAAAVPPLQAP
QPSSMVPSVASELTRICMGLGMAPPDFTFIRSRQGLLVCQVKLSSGLLVHGPQCQSENEA
KEKAALFALQRLVSVNSVGSGFPLPPPLFSGVGQIRGPPMRPIPNVFGQSGGLLMPPQGY
GPLHWGLPLPPHQGQPFYGGTFPGARPQAPSVPIGSHNQFVPLQVTKKRVSSGKKPQEFY
NTAHMARNQAPGSEPLSHFQPPLSPAPSTPPKNAQWVGTPSTPQTPRQNPSGQGNTPGSA
SKRKHRKLAVNFEAAKVQE
NT seq
5100 nt
NT seq
+upstream
nt +downstream
nt
atgggagtgccgaaattctaccgatggatttcagaaagatacccttgcctgagtgaagtt
gtcaaggaacatcagatcccagagtttgacaacctctacctggatatgaatggcatcatc
caccagtgctcgcaccccaacgacgaggacgtccacttccgtatctcagaagagaagatc
tttgcagacatcttccactacttggaggtgctgttcaggatcatcaagcccaggaaggtg
ttcttcatggccgtggacggagtggctccccgggccaagatgaaccagcagagaggcagg
agattcaggtcggccaaagaagcagaggacaagataaagaaagcccttgagaaaggagag
gtcctaccctctgaggcccgctttgactccaactgcatcacacctgggacggactttatg
gccaggctacaggagcagctcaagtactttgtcaacagcaaactatccacagataatgcc
tggaaaggagtcaacgtctacctttctggacacgagacgccaggagaaggagagcacaag
atcatggagtttatccgctcggaaaacgccaagccaggccacaacccaaacacacgccac
tgtctctatggcctggacgctgacctgatgatgttaggtctgaccagccacgagccacac
ttctccctactcagagaagaggtccgctttggagggaagaaaaaccagaagagaataact
gctccagaggagacaaccttccatctactgcacctgtcactatttagggagtacatagac
tacgagttctctgaggttaagaataagatctcgtttgagtacgacctggagcgaatcata
gatgactggatcctaatgggcttcctggtgggaaatgacttcatccctcatcttcctcat
cttcacatcaaccaagacgccctgcctctcctctaccgcacctacatcagtgtgctgcca
acgcttggagggtacttgaatgagaatggccacctgaacctgggcaactttgagaagtac
ctggagaaactgtcagagtttgacagggagcacttcaacgaggtgtttgtggatctgaag
tggtttgagagtaaggtggggaacaagtatttgaacgaggctgcaggactggcagcagag
gaggctcactgcaaggacaccaggaagaaagacctggaggactctctgcgtctaactact
ctggatgatgggaaggacagagcccctggcagaggttttgaggaggatggtgaagaagag
gacatgtttgaggcagagttccgacagtataaacgcacctactacatgaccaagatggga
gtggaggtggtctcagatgagtttctagcaaatcaggcgttgtgctatgtggagggaatc
cagtggatcctgcattactactaccatggagtccagtcctggagctggtattaccctcac
cactacgccccgttcctgtcagatgtgaggaacatagcccatctgaagttgacttttgac
atcggcaagcctttcctgcccttccagcaactactgggagtcctgcccgctgccagcaaa
gacctgcttccccagagctacaggcacctgatgacatcagagaattctagtatcattgag
tattaccctctggacttcaagacggacctcaacggaaaacagcaggagtgggaggcagtg
gtgctcatccccttcatcgacgagagatgtttgcttgctgcgatggagccttataacgat
cacatgaccaaggctgagaaggcccgtaaccgccacacagagtgtgctgtgtacagctat
gacactgagctagactacccccacacctccaccctgcctgaactgttccccaacatcatg
cactgccacgtcagggtgacaccggttcccatggacgcgtggcatgtgtcattgagccac
gtggcgcgcagtgtcaacagtagccagctctacttccttggcttccccaccctgcagcac
atcagacacaagttctataagaagaagcatggagtggtggtgttccagcagagcagccga
ggagagaacatgattctggagatcagacctagcaaagaagatccaacgtgtggtgatgtg
gcgtccctggtcctgggttgcactgtctttgtcaactggccccacctagaggaggccagg
gtggtagcagtgtctgacggggagagcaagttcttcctggaggagccggcgggagtgcag
aaactgtatgacagggactctcctccccccaccaaggtcacctacctcagtgacaaggag
cagaaggactggttgaaggacgtccagggtatcactgagcatttcagtaagcgtaagggc
atcatagtgaatgagacgggggtggtgttgtatgcccagctgctggcaggcaggaagtat
gtacctgggcagaacagacaggtgcacctggagaaacagtgggccaagcagataatgccc
ttcgcctaccagaccatcgtcaaggacatcaaggcctttgactcgtcgtcaacccgcttc
aacaccctggaggagctgtttcccccgacgaccaccgtgttcatggtggggaacccctac
tacggcgctatgggagaggtgcaggagtctagtgatgtcatcaaagagggacgggtgtgg
gtggtgttcacggtgccctgtgaaccaccgatggaagccttaatacagaaccagcataaa
tactgtgtgaagtacagtcccggctacgttctggcctctcgcctcggcgtcaccagctac
ctcgtctccagattctccggcagcatcttcgtcggcagaggatccaagaagaatccccat
ggggagcagaaggctaacgtgggtctgaacctgaagttcaataagaagaatgaggaggtg
cccggttacaccaagagaacccagaaggagtggctctactctgacgctgtggaggaactg
atggctgagtacctggataggttctctgaggtgtttgatctggtgtccaggaacagtcat
gatgatgtcttctacgaggacgacatctggcctggagaggacgagaatggggcggagaag
gtgaaggagatcacttcctggttgaagacccacccggtcgccgacatcgcccgcgcgtca
tgtgacctgcagatcctggacaaggccatcgtggagcggatcgaggaggaggtggagaag
gctaaggtgaagaagagtagtgataaagtacgtgtgactgtgaagccacatttgctcttc
aggcccttagaacagcagcacggtgtggtccctgacccggatgcagagtaccacctcttt
gaccgggtggtcaacgtcagagagagcttctccgtccccctcggcctcaggggaaccatc
atcggcatcaaggcagctgatcgggaggctgaggtgttgtatgaggttgtgtttgatgaa
gaatttgctggtggacttactatcaggtgtgcggtgggccatggctacaggctgcctccc
tgtgccttaatcaacctgagccacgggggccgtgtagagcagggcttccacaaactgacc
gccatcgtcaagccccagcctgcctcctcccaccaacacaacaaaggacagctggtcggg
ctcaaccactcaccgcgatcacccttcatatccacacagcagcagaacggcagacagaac
attctcaggacagacactcaggacaacaaaaactctgcacacaaagccagccagaaaccg
caatctaagggtaaagatgaggagttcagtaatgtgtggcagtctctgcagagctctgga
atgccccagaaaccaccagctcactggcaacaaaacaattcgggtaagtctgcctggggt
acagggtctcctggacaggaagggcagttccaggggcaacaaggcaggaaccaaccccag
agtcaacaacagcatcctcccaaacctggtccagcaggaagtatcagactcctcaagaga
aatgaagatgtcaactctctgtttcccgctcagaacgctacaaagaagcagacagagttc
gaggagttgatcgccaacctgaagatctccaagggcaacgagccaactccaccccctcca
gccaaagagcccacgagccaatcagaggagccgctttctccgcagtcattcgctatgaag
gggactctggccctgaaggagatgctgaacattggctccgcccctgactccactagtccc
gcctccttcaacacacagcagcagaacaggagacgacccaccaagaaactggcggcgagg
atgggagacccggtgttacccacggccccagcagcagcagtccctcccctgcaggccccc
cagccctcctccatggtccccagtgttgcctcagaactgaccaggatctgtatgggcctg
ggtatggccccgcctgacttcaccttcatacgcagcagacagggtctgctggtgtgtcag
gtgaagctctccagtggtttgctggtccacggtccccagtgtcagtctgagaacgaagcc
aaagagaaggcagctctcttcgccctgcagcgccttgtgagtgtgaattcagtaggttct
gggttccctctgcctccacctctgttctctggggtcggacagataaggggaccacccatg
cgacccatccctaatgtgttcggtcaatcaggtggtctgttgatgcctcctcaggggtat
ggtcccctccactggggcttgcccctcccgcctcaccagggccagcccttctacgggggc
accttccctggcgcccggccccaggcaccctccgtccccatcggctctcacaaccagttt
gtccccttgcaggtaactaagaagcgcgtgtcctcgggcaagaagccccaggagttctac
aacactgctcacatggcgaggaaccaagccccgggcagcgaacccctgtctcacttccaa
ccccccctatccccggccccctccacacccccaaagaacgcccagtgggtggggacccca
tctacgccccaaacgccgcgccagaacccctctggccaaggcaacacccccggctccgcc
tccaagaggaaacacaggaaactggcagtgaacttcgaggcagccaaagtccaagaatga
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