Coregonus clupeaformis (lake whitefish): 121535161
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Entry
121535161 CDS
T08357
Name
(RefSeq) LOW QUALITY PROTEIN: partitioning defective 3 homolog
KO
K04237
partitioning defective protein 3
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04144
Endocytosis
cclu04517
IgSF CAM signaling
cclu04520
Adherens junction
cclu04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
121535161
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
121535161
09144 Cellular community - eukaryotes
04520 Adherens junction
121535161
04530 Tight junction
121535161
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cclu01009
]
121535161
Protein phosphatases and associated proteins [BR:
cclu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
121535161
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Par3_HAL_N_term
PDZ
PDZ_6
Motif
Other DBs
NCBI-GeneID:
121535161
NCBI-ProteinID:
XP_041697874
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All DBs
Position
21:complement(26795365..27017395)
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AA seq
1390 aa
AA seq
DB search
MKVTVCFGRTRVVVPCGDGNIKVHTLIQQAVMRYKKAIAKDASYWLQVHRLEHGDGGILD
LDDLLSDVADDKDRLVAVYDEQDPHHGGDGTSASSTGTQSPDLFATELNSSNMSAFQPYQ
AASEIEVTPSALRTNMPLHVRRSSDPALATVNGPFSDPRVTLPPEKPSRKNPTRWSTTAG
FLKPRRSVGGTSTGTNSLERKGNGSDTYRSLPRDAGNQRDFQRETARSSLSANHPMVDRW
LERREQDEENSRIEPIGRADSCMDHTPVRSLDDIVKLVEVSNDGGPLGIHVVPFSARDRR
TLGLLVKRLERGGKAEQQGLFQENDCIVRINNGDLRNIHFEQAQNMFRQAMRSPVIMFHV
VPNLMKAQYEQLSHSERNPNMAYSSGRFSPDSLASERGSTTSGLDHTPQSRGPHPHPHPE
QVDAYTPLPHPLGGSMGKPPSGHAPSPHRVLNSTPTAGFTKKVGRRLNIQLKKGPEGLGF
SITSRDVPIGGSAPIYVKNILPRGAAIQDGRLKAGDRLLEVNTVDLVGRTQEEVVALLRA
TPMGGAVGLVVLRQEEAFPNAEPQMQSPRDLRRSVREAMSATAPHWLTEKVEEDDLVLTP
DGTREFLTFEIPLSDSGSAGLGVSVKGNRSKENHADLGIFVKSIINGGAACKDGRLWVND
QLIAVNGESLIGKTNQEAMETLRKSMSVEGNKRGTIQLIVARRVTKRSELEAPGSPLGPE
QTLLNSSLLDDRERRISHSLYGGIEGLDDNLMPRQALMGRMMGNYQLSPTVNMPQDDTVI
IQDDRPPVLPAQLSDQSSSSSHDDVGFHVEVPPSWAKDIQIQNESTLSPDDTDPDGAFQR
EGFGRQSMSEKRTKQFGDASQLEIMKTRKSKSMDLVADEINLTPRKENTPGSSTRDVGPS
LGLKKSSSLESLQTAVAEVTLNGDMPFHRPRPRIIRGRGCNESFRAAIDKSYDRPAATEE
DDEGMETLEEDTEESSRSGRDSVSTVADLTPLSNTERPLVNGNRTNEDKKKDKGGKDKKK
QDRDKEKDNKNKAKKGMLKGLGDMFRFGKHRKDGEKLERKGRLEELQASEEETLRMRLEQ
ERIQAKTRELRERQARERDYAEILDVNLSRDEEHPYAGIGPLDMSLDSGHSRPQSPRDDH
HQDSSLYTQVGKARNTNGRPPSADSNRLAPSNHDRIQRLRHEFQQARGDDDPDDRRRTYS
FEQPWPNNTNTGPYQTDRQQTGRHSVSVEVQRQRQRQEERDAFQQAQRQYSSLPRQPRKN
PSSISQDSWDKVYPPGEGFQTAKENPRYSSYKASRNGYPGVSSVNARVLLEAQELLRQEQ
RRREQEAKEKQLLLAPPQEHLGNNTYDGYSAHKDPVSPKGPYRQDVPPSPSQLARLNKLQ
GPEKGRPFYS
NT seq
4173 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtgacggtgtgttttggaaggactagggtggtggtaccgtgcggagatggaaat
atcaaagtccatactctcatccagcaagccgtcatgagatacaaaaaagccattgcaaag
gatgccagctactggttacaggtgcaccgtttggagcatggagacggaggcatcctagac
cttgatgacttgctgtctgatgtggctgatgacaaagacaggctggtggctgtgtatgat
gagcaggaccctcaccatggaggcgacggcaccagcgccagctccacgggaacccagagt
cctgacctgttcgccacagagctcaactccagtaacatgtcggctttccagccctaccag
gccgccagcgagatagaggtcactccgtccgcccttcgaaccaatatgcccctccatgtg
cgtcgcagtagtgacccggccctggcgacagtcaacgggccgttcagcgacccccgcgtg
accctgccgccggagaaaccgtccaggaagaaccccacccgctggtccaccacggctggc
ttcctcaaaccacgacgctctgtaggaggcaccagcactggcaccaacagcctggagaga
aagggtaatggttcggacacgtaccgtagtctcccccgggatgcaggcaaccagagagat
ttccagagagagacggcccgctcctccctgagcgccaaccaccccatggtagaccgctgg
ctggagagacgggagcaggacgaggagaacagcaggatcgagccgattggccgagctgat
tcctgtatggaccacacccctgtgaggtccctagatgacattgtaaagctggtagaagtc
tccaatgatggtgggcccttggggatccatgtagtacctttcagtgcccgggaccgcagg
actctaggcctgttggtcaagcgcctggagaggggaggcaaggcggagcagcagggtctg
ttccaggagaacgactgcatcgtacgcattaataatggagacctgcgtaacatccatttc
gaacaagcccaaaacatgttccgccaggccatgcgttccccggtcatcatgttccacgtg
gttcccaacctgatgaaggcccagtacgagcagctgtcacacagcgagaggaaccccaac
atggcctactcctctggacgcttcagccccgactccctagctagcgagagaggcagcacc
acctcaggcctggaccacaccccacagtcccgtggtccccacccccacccacacccggag
caggtcgacgcctacacccctctacctcacccccttgggggctccatgggcaagccccca
tcaggccatgccccctcccctcacagggtgctaaactcaacccccacggcgggcttcacc
aaaaaggttggcaggagactcaacatccagctcaagaaaggtccagagggtctgggattc
agcatcacgtcgcgcgacgtccccatcggcggctcggcgcccatctatgtgaagaacatc
ctgcccagaggagctgccatccaggacggacgcctcaaggctggagacaggctgctggag
gtaaatacagtggacttggttggtcggacccaggaggaagtggtcgctctgctgagggcc
acgcccatgggaggagctgtgggactggtggtgctacgacaggaggaggccttcccgaat
gcagagccccagatgcaaagccccagagatttgcgtcgctcggtgagggaggccatgtcg
gctacggcgccccactggctgactgagaaggttgaggaggatgacctggtgttgacccct
gacggaaccagggagttcctgacctttgagatccctctgagtgactcggggtcggcaggg
ttaggggtcagcgtcaaaggcaaccgctccaaggagaaccacgctgacctaggcatcttc
gtcaagtccataatcaacggaggagctgcctgcaaggatggaaggctgtgggtcaatgac
cagctgatagcggtgaacggggagtcgttgataggcaagaccaaccaggaggccatggag
acgctaaggaagtccatgtcggtagagggcaacaaacgtgggacgattcagctgatagtg
gccagaagggtcaccaaacgcagtgagctggaggccccagggagccccctgggaccggag
cagaccctcctgaactcctccctgctggacgaccgggagcgtcgtatctcccactccctg
tacggaggcatagagggcctggacgataacctgatgccacggcaggccctgatgggcagg
atgatgggtaactaccagctctcccctacggtcaacatgccccaggatgatactgtcatc
atccaagacgataggccgcctgtacttcctgcccagctctccgaccaatcgtcttccagt
tcccatgatgatgtggggttccatgtggaggtccctccctcttgggccaaagatattcaa
attcagaatgagagcacactgagccctgatgacaccgacccagacggagcctttcagagg
gagggtttcggcagacagagcatgtcagagaaacggacaaagcagtttggagatgccagt
cagctggagatcatgaagacacgcaagtccaagagcatggatcttgtagccgacgagatt
aacctcacccctcgcaaagagaacacaccagggtcttccaccagggacgtgggtccctcc
ctaggcctcaagaagtccagctctctggagagtttacagaccgccgtggccgaggtgacg
ctcaacggtgacatgcccttccacaggccacgcccacgcataatcagggggcggggctgt
aacgagagcttccgggccgctattgacaagtcttatgacaggccagctgccaccgaggag
gacgatgagggcatggagacattggaagaggacacagaggagagctctcggtccgggcgc
gactctgtgtccaccgtggcagatctgaccccactgtccaacacagagagaccgctggtc
aacggcaaccgcaccaatgaagacaagaagaaggacaagggagggaaagacaaaaagaaa
caagacagggacaaagagaaggacaacaagaacaaggctaagaaaggcatgctgaaagga
ctgggagacatgttcaggtttggaaaacaccgcaaggacggagagaaactagagcgtaaa
gggaggctggaggagctgcaggcctcagaagaagagacactgaggatgagactggagcag
gagaggatccaggctaagacccgggagctgcgggagcgccaggcacgggagagggactac
gctgagatccttgatgtcaacctgagccgagatgaggagcacccctacgcaggcatcggg
cccctggacatgtccctggacagcgggcacagccggccccagagccccagagacgaccac
caccaagactcctccctctacacacaagtcggcaaagcccgcaataccaacggacgccct
ccctctgccgacagcaacagactagcgcctagcaaccatgaccggatacagcggctgagg
cacgagttccagcaggccaggggggacgacgaccctgacgaccggagacgcacctacagc
ttcgagcagccctggcccaacaacaccaacacaggcccgtaccagacagacagacaacag
acgggccgtcactctgtgtctgtagaggtgcagagacagagacagaggcaggaggagaga
gacgccttccaacaggcgcagagacagtacagctccctgccacggcaacccagaaagaac
cccagctccatctcgcaggactcctgggacaaggtctacccgccgggcgagggcttccag
acggccaaggagaaccctcgctactccagctacaaggcctccagaaacggctacccgggg
gtgagcagtgtgaacgcccgcgtcctgctggaggcccaggagctgctgaggcaggagcag
agacgcagggagcaggaggccaaagagaagcagctactgctagcgcccccacaggagcac
ctcgggaacaacacctatgatgggtactcggctcacaaggaccctgtgtcgcctaagggc
ccctatagacaggacgtacccccctcaccctcccagctggccaggctcaacaagctgcag
gggcctgagaagggcaggcccttctactcctga
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