Coregonus clupeaformis (lake whitefish): 121535211
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Entry
121535211 CDS
T08357
Name
(RefSeq) E3 ubiquitin-protein ligase COP1 isoform X1
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04115
p53 signaling pathway
cclu04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
121535211
09140 Cellular Processes
09143 Cell growth and death
04115 p53 signaling pathway
121535211
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cclu04121
]
121535211
Enzymes [BR:
cclu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121535211
Ubiquitin system [BR:
cclu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
121535211
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
121535211
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
Beta-prop_EIPR1
Beta-prop_RIG_2nd
zf-C3HC4_2
EIF3I
Beta-prop_WDR19_1st
Beta-prop_TEP1_C
zf-C3HC4
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_DCAF4
Beta-prop_EML
zf-RING_2
zf-RING_UBOX
zf-C3HC4_3
Beta-prop_WDR90_POC16_2nd
zf-RING_5
zf-C3HC4_4
RING_XB3-XBAT31
Beta-prop_Vps41
WD40_RFWD3
Beta-prop_WDR35_TULP_N
WD40_like
Beta-prop_IFT140_1st
Beta-prop_DCAF12
Beta-prop_NUP159_NUP214
Beta-prop_IFT122_1st
zf-RING_10
UvrD-helicase
WDR90_beta-prop_4th
zf-rbx1
zf_C2H2_10
Sina_RING
DZR
PH_19
Motif
Other DBs
NCBI-GeneID:
121535211
NCBI-ProteinID:
XP_041697979
LinkDB
All DBs
Position
21:31182208..31223187
Genome browser
AA seq
715 aa
AA seq
DB search
MSSNRQQQTGGGAGPVSGSSSSTGGTTNANGATSVTLGGDDSANMNNSPNVVPSRTLATA
GEGLLVSGVAVQSPRSLAPLSRSSSSSSGTSRKRPLHQAPLYNGLLNSYEDKSNDFVCPI
CFEMIEEAHMTKCGHSFCYKCIRQSLEDTNRCPKCNYIIDNVDQLYPNFLVNELILKQKQ
RSDEKRLKMDHPNGSRWQVFQDVLGTDQENLDLANVNLMLELLVQKKKQLEAESQAAQRQ
ILMEFLKEARRNKREQLEQLQKELNFLEEDMKRVEEISGLYSTVSDMDRNLDSTVPNFEA
PSPAPSSLIDSTEYVSQPPGFGGTSQGKRQTWYNSTLASRRKRLTAHFEDLEQCYFSDRM
TRITDDTRNLNQLDDFMECLSKFTRFNSVRPLATLSYASDLYNGSSIVSSIEFDRDGDYF
AIAGVTKKIKVFEYGTVIQDAVDIHYPVNEMTCNSKISCISWSSYHKNLLASSDYEGTVI
LWDGFTGQRSKVYQEHEKRCWSVDFNLMDPKLLASGSDDAKVKLWSTNLDNSVASIEAKA
NVCCVKFSPTSRYHLAFGCADHCVHYYDLRNTKQPIMVFKGHRKAVSYAKFVNGEEIVSA
STDSQLKLWNVNKPHCLRSFKGHINEKNFVGLASNGDYVACGSENNSLYLYYKGLSKTLL
TFKFDTVKSVLDKDKKEDDTNEFVSAVCWRAMPDGDSNVLIAANSQGTIKVLELV
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagcaaccgtcaacagcaaactggcggtggagcagggcctgtgtctgggagtagc
agcagtaccggtggcactaccaatgctaacggtgccaccagcgtaacgttaggcggcgac
gatagtgcgaatatgaacaattctccaaatgttgtgccctcgcggactctggcaacagct
ggcgaggggttgctcgtgtctggagtggctgtacagtctccaagaagcttagccccacta
agcagatccagttcatcctcctctggcaccagcagaaaacgtcctctccaccaagcacca
ctctacaatggtctcttgaattcctacgaagataaaagcaacgattttgtgtgcccaatc
tgttttgaaatgattgaggaggcacacatgacaaaatgtggacacagtttctgctacaag
tgcattcgccagagtttagaggacaccaataggtgcccaaaatgtaactacatcattgac
aacgtggatcagctctatccaaactttcttgtgaatgaacttattctcaaacaaaaacag
agatcagatgaaaaacgtctgaagatggaccatccgaatgggtcaagatggcaagtgttc
caagacgtccttggcacagaccaagagaacctagatcttgctaatgtcaacttgatgctg
gaactccttgtacagaaaaagaaacaactggaagcggaatcacaagctgctcaacgtcag
atcttaatggaattcctcaaagaagcaagaagaaataaaagagagcaactggagcagttg
cagaaggagctaaactttttggaggaggatatgaagcgtgttgaggaaattagtggactg
tactcaacagtgagtgacatggatcgtaacttggacagcactgtacccaatttcgaggct
ccctcacctgcacccagtagtcttatagattcgacagagtacgtgagtcaacctccaggt
tttggtggaacttcacaggggaagaggcaaacatggtacaacagcactctggcttctcgg
agaaagaggctcacagcgcactttgaagatctggagcaatgctacttctctgaccggatg
acacggataacagatgacaccaggaacttaaatcaactggatgatttcatggagtgtctc
tcaaagttcacacgcttcaactctgtgcggccgttggcgaccctgtcttatgctagtgat
ctctacaacggctccagtattgtctctagcattgaatttgaccgtgacggtgattacttt
gccatcgctggcgtcaccaagaaaatcaaggtgtttgaatatggaactgtgatccaggat
gctgtggacattcattacccagtcaatgaaatgacgtgcaactccaaaatcagctgtatc
agctggagcagctaccacaagaatctgttggctagcagcgactacgagggaacagtcatt
ctgtgggatggtttcactggccaaaggtcaaaggtctatcaggagcatgagaaaaggtgt
tggagtgtcgatttcaacctcatggatcccaagcttctagcctctggttctgatgacgca
aaagtgaaattatggtctaccaaccttgacaattcagtcgccagcatcgaggccaaagca
aatgtgtgctgtgtaaagttcagtccgacgtcgaggtatcaccttgcttttggctgtgca
gaccactgtgtccactactacgacctccgcaacactaaacagcccatcatggtgttcaaa
ggccacaggaaagctgtgtcctatgctaagtttgtcaacggagaggaaattgtatctgcc
tcaacagacagccagctaaagctgtggaatgtaaacaagccccactgcttgcgctcattc
aagggccacatcaatgagaagaactttgttggccttgcctccaatggagactatgttgcg
tgtggaagtgagaacaactctctttatctatactacaaaggcctgtccaagacactgctg
acattcaagtttgacactgtgaagagcgtgctggataaagacaagaaggaagacgacact
aatgagtttgtcagcgctgtatgctggagagctatgcctgacggggactccaatgtgctg
attgctgcaaacagtcaagggacaatcaaggtacttgaacttgtttga
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