Coregonus clupeaformis (lake whitefish): 121535217
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Entry
121535217 CDS
T08357
Name
(RefSeq) protein patched homolog 1-like isoform X1
KO
K11101
patched 2
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
121535217
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Motif
Pfam:
Sterol-sensing
TRA2_N
Patched
Motif
Other DBs
NCBI-GeneID:
121535217
NCBI-ProteinID:
XP_041697992
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All DBs
Position
21:31745156..31775552
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AA seq
1453 aa
AA seq
DB search
MASDPRVPGAGVFGDLPPSYTRSPPQVNSDLLRRPSYCHAAFALKQISKGKAVGQKAPLW
IRARFQALLFSLGCHIQRHCGKVLFIGLLVFGALSVGLRVAAIETDIEQLWVEAGSRVSR
ELRYTKEKQGEESVFTSQMLIQTPKQEGTNILTQDALLLHLEAALSASKVQVSLFGKSWD
LNKICYKSGVPIIENVMIERMIDKLFPCMIVTPLDCFWEGAKLQGGSAYLPGMPDIQWMN
LDPLKLMEELSQFTSLEGFREMLDKAQVGHAYMNRPCLDPNDSDCPLSAPNKDLRESPDI
AGRLQGGCHGFSKKFMHWQEELILGGRVKDTQNALQSAEALQTMFLLMSPKQLYEHFKDD
YEIHDINWNEDKATAILESWQRKFVEVAHGSIPQNSTSEIHAFSTTTLNDIMKSFSDVSV
IRVAGGYLLMLAYACVTMLRWDCAKSQGAVGLAGVLLVALSVAAGLGLCSLLGLSFNAAT
TQVLPFLALGIGVDDMFLLAHSFTETGINIPFKERTGDCLRRTGTSVALTSINNMIAFFM
AALVPIPALRAFSLQAAIIVVFNFAMVLLIFPAILSLDLHRREDKRLDILCCFYSPCSSR
VIQIQPQEFSDANDNTTHSHAPGAQTTTSYTGSTITTSTQITTTVQAFTQCDAAGQHIVT
ILPPTSQISTSPPSVVVASSPTDPYGSQLFTPSSSTRDLLAQMDESKEARECVPLPFFRW
NLSSFARDKYAPLLLKPESKVVVVVLFVTLLGLSLYGTTMVHDGLYLTDIVPRDTKEYDF
INAQFKYFSFYNMYLVTMDGFDYPRSQHLLIQLHNSFTSVKYVVRDSDQQLPRMWLHYFQ
DWLRGLQAAFDSDWEAGRITWDNYRNGTEDGVLAYKLLIQTGSKKDPFNYNQLTSRRLVD
EDGLIHPEVFYIYLTVWVSNDPLGYAASQGNFYPHPREWIHDKYDTTGENLRIPAAEPLE
FAQFPFYLNGLRQASDFIEGIESVRAICEEFTRKGVRNYPNGYPFLFWEQYIGLRHWFLL
AVSVVLACTFLVCAILLLNPWTAGIIVFILAMMTVELFGIMGLIGIKLSAIPVVILIASV
GIGVEFTVHIALAFLTAVGNRNRRSAVALEHMFAPVIDGAISTLLGVLMLAGSEFDFILR
YFFAVLAILTVLGILNGLVLLPVLLSLMGPPPEVTPSDNGSCLPTLSPESLPPPMTHHGY
YAGHGPLGPRQQAFSESSESEYYSETTTTSGIGEEEYKYCDRSPYITPPTSHILLEASKN
PSFPKLTVVKPFKGNQSVTAQKELLNESSPNAVNSVSSQLMQWDNKHDYNSDQGPRRQHL
PSDRTHGPGRTNHCGPRSQTHKGPHQNRTKMPACNVGIMPSSAVTTMVTATASVTVAVHP
SLPGAYQGYMHEGYEDSESDCFEDTKRTSQSCGKAPQSSKRESLELQDLESVQNHYQANQ
AQGGPWIQAAKDC
NT seq
4362 nt
NT seq
+upstream
nt +downstream
nt
atggcctcggatcccagagtcccaggggccggtgtttttggagatttacccccaagttat
acgcgttctccgccgcaagtaaactcagatcttctccggagacccagttactgccacgct
gctttcgcattaaaacagatttctaaggggaaggctgtgggtcagaaagccccgttgtgg
attcgggcgcggttccaggctcttctcttttctttgggctgtcacatccagcgacattgt
ggaaaagtccttttcattggactgcttgtgttcggtgccttgtctgtgggtttgcgggtc
gctgccattgagacggacattgagcaactatgggtggaagcaggtagccgagtgagtcgg
gagctgcgctacaccaaggagaagcagggagaggagtctgtgttcacgtcgcagatgctc
atacaaacccccaaacaggaaggaactaacattctgacccaggatgctttgctgcttcac
ctggaggcagcgctctcggccagcaaggtccaggtgtctctgtttggaaaatcatgggac
cttaataaaatctgctacaaatctggagtccctatcatagaaaatgtaatgattgaaagg
atgattgacaagctgttcccctgtatgattgttaccccactggactgtttctgggaaggt
gcaaagctccagggggggtcagcatacttaccggggatgcctgacatccagtggatgaac
ctggaccctctgaagctgatggaggagctcagccagttcaccagtctggagggcttcagg
gagatgctggacaaggcccaggtgggccacgcctacatgaaccgcccctgcctggacccc
aacgactccgactgccccctcagcgcccccaacaaggacttgagagagagtcctgacatt
gctgggcgtctccaaggcggttgccacggcttctccaaaaagttcatgcactggcaggag
gagctgatcctgggcggtcgggtcaaggacacccagaatgctttgcagagtgcggaggca
ctccagaccatgtttctcctgatgagccccaagcagctctacgagcactttaaggatgac
tatgagatccatgacatcaactggaacgaggacaaggccaccgccatcctggagtcctgg
cagaggaagtttgtggaggtggctcatggcagtatcccccagaactccacttcagagatc
cacgccttctccaccaccaccctcaacgacatcatgaagtccttctctgatgtcagtgtc
atccgggtggctggaggctacctgctcatgctggcctacgcctgtgtgaccatgctccgt
tgggactgtgccaagtctcagggggctgtggggctggctggtgtgctcctggtagctctg
tctgtggcagctggcctggggctgtgctctctgctgggcctgtcctttaacgctgccacc
acacaggtactccccttcctggctctggggatcggtgtggatgacatgttccttctggcc
cactccttcactgagactggcatcaacatcccctttaaggagaggacaggggactgcctg
aggaggactggcaccagcgtggcactcacctccatcaacaacatgattgccttcttcatg
gcagccctggtccccatcccagcactgcgcgccttctctctgcaggcggccattattgtg
gtgttcaacttcgccatggtgcttctcatcttcccggccatcctgagtttggacctgcac
cgtcgggaggataagcgtctggacatcctgtgttgtttctacagcccctgctcctcccgg
gtcatccaaatccaaccccaggagttctccgatgccaacgacaacaccacccacagtcat
gcgcctggcgcccagactactacgagctacaccggctccaccatcaccaccagtacccag
atcactaccaccgtccaggccttcacccagtgtgacgcggcgggccagcacatagtcacc
atcctgccccccacctcccagatctccaccagccctccctctgtggtggtggcctcctcc
cccaccgacccctacggctcccagcttttcaccccctccagctccacccgggatctcctg
gcccagatggacgagtccaaggaggccagggagtgtgttcctctccccttcttccgctgg
aacctgtcaagcttcgcccgggacaagtacgctcctctcctcctaaagccagagagcaag
gtggtggttgtggtcctcttcgtgactctgctggggctcagcctctacggaaccaccatg
gtccacgacggactctacctgacagacattgtgccccgcgacaccaaggagtacgacttc
atcaatgcccagttcaaatacttctctttctacaacatgtacctggtgaccatggatggc
tttgactacccccgatcccagcatctcctcatccagctgcacaactccttcacctcggtc
aagtacgtggtgagggacagcgaccagcagctgccccggatgtggctgcactattttcag
gactggctaagaggactgcaggctgccttcgattcagactgggaggcaggcaggatcacc
tgggataactaccgtaacggcaccgaggatggtgttctggcctacaagctgctcatccag
accggctccaagaaggaccccttcaactacaaccagctgacttctcgtcgtctggtggat
gaggacggtctaattcacccggaggtcttctatatctacctgactgtgtgggtgagcaac
gaccctctgggctacgctgcctctcagggtaacttctaccctcacccccgtgagtggatc
cacgacaagtacgataccaccggagagaacctgcgcatccctgctgcagagcccctggag
tttgcccagttccccttctacctgaacggcctgaggcaggcgtccgacttcatcgagggt
attgagagcgtgcgcgccatctgcgaggagttcacccgtaaaggcgtgcgcaactacccc
aacgggtaccccttcctgttctgggagcagtacatcggcctgcgacactggttcctcctg
gcggtcagcgtggtgctagcctgcaccttcctcgtctgtgccatcctcctgctcaacccc
tggaccgctggcatcattgtcttcatcctggctatgatgacggtggagctcttcggtatt
atgggcctgataggcatcaagctcagtgccatcccagtggtcatcctcatcgcctctgta
ggcatcggtgtcgaattcaccgtccatatcgcactggcctttctgacggccgtagggaat
aggaacaggcgttctgcggtggccctggagcacatgtttgcccctgtgattgacggggcc
atctctactttgctgggcgtcctcatgctggctggctccgagtttgacttcatcctgagg
tacttctttgcggtgctggctatcctgactgtgctggggatcctgaatggactggtgctg
ctacccgtgctgctctccctcatgggcccacccccggaggtcaccccgtccgacaacggc
agctgcctgcccaccctgtcgccagagtccctcccccctcccatgacccaccacggctac
tacgcgggacacggcccactcggcccccgacaacaggccttctcagagtcctccgagtca
gagtactactctgagacgactaccacgtcagggataggagaggaggagtacaagtactgt
gaccgcagtccttacatcacacctcctacttcccatatactactggaggccagcaagaac
cccagcttccccaagctcacggtggtgaaaccgttcaaagggaaccaatctgtaactgct
cagaaagaacttttaaatgaatcttctccgaatgcggtgaactccgtcagctctcaactc
atgcagtgggataacaaacatgattacaattctgaccagggacccaggaggcaacattta
cccagtgacaggacccacggtcctgggaggactaatcactgtggtcccaggtctcagaca
cacaaagggcctcatcagaacaggactaagatgccggcctgtaatgtcggtatcatgccc
agtagtgctgttactaccatggttacggccacggcctcggtgactgtggcggtgcacccc
agcttgccgggggcctaccagggttacatgcatgagggctacgaggacagtgaatcagac
tgttttgaggacactaagaggacttcacaatcttgtgggaaagctccccaatcttccaag
cgtgaatccttagagcttcaagacctggaatctgtacagaaccactatcaggcgaaccag
gcacaaggtggcccatggatccaggcagccaaagattgctag
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