Coregonus clupeaformis (lake whitefish): 121535244
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Entry
121535244 CDS
T08357
Symbol
cdh12a
Name
(RefSeq) cadherin-12a
KO
K06804
cadherin 12, type 2, N-cadherin 2
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cclu04515
]
121535244 (cdh12a)
Cell adhesion molecules [BR:
cclu04515
]
Cadherins
Major cadherins
121535244 (cdh12a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
CADH_Y-type_LIR
Cadherin_CELSR2_9th
Cadherin_4
Stevor
Motif
Other DBs
NCBI-GeneID:
121535244
NCBI-ProteinID:
XP_041698051
LinkDB
All DBs
Position
21:16823739..16861961
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AA seq
806 aa
AA seq
DB search
MITRNGLLLVFWFLLDKGFLAPLHSPPQSRMGREQHLRGVAGLGQRRHGASGVQRVKRGW
VWNQFFVLEQYMGSEPQYVGKLHTDLDRGDSNVKYTLSGEGAGTIFTIDQTTGDIHALMG
LDREEKSYYTLRAQAVDMYTGRPLEPESEFIIKVQDINDNEPKFLDGPYTASVPEMSPGG
TFVMQVTATDADDPTYGNSARIVYSILHGQPYFSVDSKTGVIRTALPNMDREVKELYQVL
IQAKDMGGQLGGLAGTTTINITLSDVNDNPPRFSKSIFHLRVPESSSVGSAVGKIRAHDL
DSEKNAEVEYSIVPGDEGNMFNITSNGDSQEGIIVLSEHLDYETKRSYTFKVEASNAHLD
PRFLLRGPFKDTATVKVNVLDVDEPPVFTKTSYTIDVYEDTPVSTIIGSVTAQDLDAGTS
AVRYSIEWKRPVDSCFGIDTVEGTISTNEMLDRESNRQHNISVVATKVNNPLLSNKVTVT
INVLDVNEFPPEFAIPFDTFVCEKAKVGQVIQTISAMDKDLPAVGQKFFFKSPREIRNRN
FTVRDFGNNTAGIVTKRVGFQRRVQEFYVVPVVVEDSGYPAQSSTGTLTVRVCACETDGS
LLSCTAEAVFLPVGLSTGAVMAILLCMVILLVIVVLYVGLRRQKKRETLMSSKEDMRDNV
IHYDVEGGGEEDTHAFDMGTLRNTKAIKEHMLRQGTGSWSDVTAQTEINGSTPTTEGSTD
IIRDYIHQCLQENHLGFSSPPYDSLATYAYEGDGSVAESLSSIESWTADGREDFRYLSEW
GPSFKTLAGILDKDKADPPTVEVEES
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atgattacaaggaacggtctgctgttggtcttttggtttctcttggacaaaggcttcctg
gctcccctccactctccgccccaaagcaggatgggaagagagcaacacctgaggggtgtg
gcaggactgggacagaggagacatggggcatcaggggttcagagggtgaagagaggatgg
gtgtggaaccagttctttgtactggagcaatatatgggatcggaaccacaatatgttggg
aagcttcacactgacctggacaggggcgacagcaacgtgaagtacactctctcaggagaa
ggagccggaaccatcttcaccatagaccagacgacgggtgacatccatgccttgatgggt
ctggacagagaggagaagtcttactacacgttacgagcccaggctgtggacatgtacaca
ggcaggcctctggagcctgagtctgaattcataatcaaagttcaagacatcaacgacaat
gaaccaaagttcttggatggcccatatactgccagtgtcccagagatgtcaccagggggt
acttttgttatgcaggtgactgccacagatgctgacgaccccacctatgggaatagtgca
cggatcgtgtacagtatcctacatggacagccttacttttcagtcgactccaaaactggg
gttatcaggactgcgttgcctaacatggaccgtgaagtgaaggagctgtaccaggtcctt
attcaggcaaaagatatgggcggtcagctgggaggactagccggaaccaccaccattaac
atcaccctcagcgacgtcaacgacaacccacccaggttttcaaaaagtatattccatctc
agggtcccagagtcttcatcagtgggctcagcagtggggaagatcagagctcatgacctg
gactctgagaagaatgcagaggtggaatattctattgttcctggagatgaaggaaacatg
tttaacatcacctccaacggggacagtcaagagggaatcatagtccttagtgagcatctc
gactatgaaaccaaaaggtcatacacctttaaagtggaggcatccaatgctcacctggat
ccccggttcctcctccggggccccttcaaagacactgccaccgtcaaggtcaacgtgctg
gatgtggatgaaccccctgtgttcactaagacctcttacactatagatgtgtatgaggac
actcctgtgagcaccatcattggatctgttacagcgcaggacctagatgcaggtaccagt
gcagttagatactctattgagtggaagaggcctgtggacagctgctttggcattgatact
gtggaagggaccatctccaccaacgagatgttggacagagagagtaataggcagcacaat
atctctgttgtggccactaaagttaacaaccctctcctatccaacaaggtcacagtaaca
atcaatgtgctggatgtcaacgagttccctccagagttcgccattccctttgacactttt
gtctgtgaaaaagcaaaagtaggccaggtcattcagaccatcagtgctatggacaaggat
cttcccgctgttggacagaagttcttcttcaagtcccccagggaaatcagaaaccgaaat
ttcactgtgcgagactttggaaacaacacagcagggatagtaactaagcgtgtggggttc
cagaggcgggtccaggagttctatgtggtgcctgtggtggtggaggatagtgggtaccca
gcccagagcagcaccggcaccctcactgtccgggtgtgtgcctgtgagaccgacgggtcc
ctcctgtcctgcacggcagaggcagtcttcctaccagtgggcctcagcaccggggcagtg
atggccattttactgtgcatggtcatactcctggtgattgtggtgctctacgtgggcctg
agacggcagaagaaaagggagacattgatgtcatccaaggaggacatgcgggacaacgtg
atccactatgacgttgaggggggcggcgaggaggacacccacgccttcgacatgggcaca
ctgaggaacaccaaggccatcaaggagcacatgctccgccagggcacagggtcatggtca
gatgtcaccgctcaaactgagatcaatgggtcaacccccaccacagagggcagcactgac
atcatcagggactatattcaccagtgtctccaggagaaccacctgggtttctcttctccg
ccatatgactccctggctacatacgcctacgagggggatgggtcagtggcagagtcgctg
agctccatcgagtcgtggacggcggacggccgtgaggacttcagatacctcagcgagtgg
ggaccatccttcaaaactctggcggggatattagacaaagacaaagcagatcctcccact
gtggaagtggaggagagctga
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